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fmi-faim / faim-ipa

A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
BSD 3-Clause "New" or "Revised" License
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Create ome-zarr from hdf5 container #176

Open tibuch opened 2 months ago

tibuch commented 2 months ago

We have a test-dataset which contains all raw data (including metadata files) of a CV acquisition packaged into an hdf5 container. We should test if we can use this as input to our ome-zarr converter.

tibuch commented 2 months ago

This works. See https://github.com/fmi-faim/faim-ipa/blob/b834c844d3aedb3227dcfb7c852890a2ccb35587/examples/hdf5-to-zarr/benchmark.py

imagejan commented 1 month ago

Also try to extract from zip container, and compare performance.