Create 3D Tile for CV and MD acquisitions

fmi-faim / faim-ipa

A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

BSD 3-Clause "New" or "Revised" License

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Create 3D Tile for CV and MD acquisitions #83

Open tibuch opened 7 months ago

tibuch commented 7 months ago

The DaskTileStitcher now supports 3D data. We could reduce the computation graph for 3D stitching by introducing a Tile that loads multiple z-planes and assembles them into a 3D image. This could lead to faster stitching of 3D (ZYX) data.

tibuch commented 6 months ago

There is now a [StackedTile](https://github.com/fmi-faim/faim-hcs/blob/main/src/faim_hcs/hcs/cellvoyager/StackedTile.py) for the CV data.

imagejan commented 1 month ago