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fmichonneau / phylobase

An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
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upcoming RNeXML release introduces a new warning #11

Closed cboettig closed 5 years ago

cboettig commented 5 years ago

Hey @fmichonneau , @hlapp and I are planning a new RNeXML release, which I'm afraid introduces a new WARNING to the automated check of phylobase:

New result: WARNING
  Found the following significant warnings:
    Warning: replacing previous import ‘RNeXML::slot<-’ by ‘methods::slot<-’ when loading ‘phylobase’
    Warning: replacing previous import ‘RNeXML::slot’ by ‘methods::slot’ when loading ‘phylobase’

I believe this warning actually has no impact on the behavior of phylobase, but I'm not sure how / if it can be suppressed, since it is tied up in S4 internals. @hlapp has looked at this more recently and might have some good suggestions?

hlapp commented 5 years ago

I suppose this is because methods is being imported in whole in Phylobase.