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fmicompbio / einprot

Proteomics analysis workflows
https://fmicompbio.github.io/einprot/
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Additional arguments for plotMissingValuesHeatmap() #24

Closed skiaphrene closed 1 month ago

skiaphrene commented 2 months ago

It would be nice to have additional control over the ComplexHeatmap::Heatmap() call within einprot::plotMissingValuesHeatmap(), in particular clustering rows/columns, and showing row/column names. These could be passed as named arguments to the plotMissingValuesHeatmap() function, or for other functionality, as ... that is then passed on to Heatmap(). I don't expect these would need to have script-level settings, it would only be for the power-users...

skiaphrene commented 2 months ago

Additional idea: restrict MV heatmap to features with at least 1 MV.

csoneson commented 1 month ago

These are both now implemented in the current development version (v0.9.6)

Also the density imputation plots: