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fmicompbio
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footprintR
Tools for working with single-molecule footprinting data
https://fmicompbio.github.io/footprintR/
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Filtering vignette
#18
Open
csoneson
opened
4 days ago
csoneson
commented
4 days ago
[ ] recommended workflow (first 2 steps could be 'run the QC report')
[ ] readmodBam in sampling mode
[ ] addReadStats
[ ] determine filter thresholds and use them later
[ ] readmodBam
[ ] addReadsSummary
[ ] addReadStats
[ ] filterReads
[ ] filterPositions
[ ] addReadStats (don't overwrite the previous one)
[ ] custom filtering of reads (or positions)
[ ] subsetting positions
[ ] examples of subsetReads
[ ] add description of default/commomly used assay names in one of the vignettes