Enable `readModBam` to add `sequence.context`

fmicompbio / footprintR

Tools for working with single-molecule footprinting data

https://fmicompbio.github.io/footprintR/

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Enable `readModBam` to add `sequence.context` #20

Closed mbstadler closed 1 month ago

mbstadler commented 1 month ago

Add arguments sequence.context and sequence.reference to readModBam (similar as in readBedMethyl), so that it can call addSeqContext internally and populate the sequence.context column of rowData(se).

mbstadler commented 1 month ago

Adressed in 3d52283.

The arguments sequence.context and sequence.reference were added bot to readModBam and readModkitExtract.