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fmicompbio / footprintR

Tools for working with single-molecule footprinting data
https://fmicompbio.github.io/footprintR/
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QC report generation #9

Open mbstadler opened 3 weeks ago

mbstadler commented 3 weeks ago

It would be useful to have a function that takes one or a set of bam files (modBam) and generates an quarto(Rmd/litedown)/html quality report (similar to the einprot reports).

It could be based on Pan's existing reports, maybe supporting visualizations for multiple samples.

csoneson commented 4 days ago

Check e.g. https://github.com/csoneson/alevinQC/blob/devel/R/alevinQCReport.R

csoneson commented 4 days ago

For annotation-dependent aspects, could have (e.g.) arguments where the user can specify a GRanges or GRangesList object.