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fmicompbio / monaLisa

binned motif enrichment analysis and visualisation
https://fmicompbio.github.io/monaLisa/
GNU General Public License v3.0
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change naming of PWMs #15

Closed LukasBurger closed 5 years ago

LukasBurger commented 5 years ago

in dumpJaspar rerun dumpJaspar and rerunHOMER and clusterPWMs and adjust vignette

mbstadler commented 5 years ago

Current names are defined in dumpJaspar as follows:

        wm.name <- paste(c(TFBSTools::name(siteList[[i]]),
                           paste(TFBSTools::tags(siteList[[i]])$acc, collapse = "::"),
                           TFBSTools::tags(siteList[[i]])$type), collapse = "|")

What about just (or some modification of that taking care of the special characters):

      wm.name <- TFBSTools::name(siteList[[i]])
LukasBurger commented 5 years ago

done