not depend on HOMER - Githubissues

fmicompbio / monaLisa

binned motif enrichment analysis and visualisation

https://fmicompbio.github.io/monaLisa/

GNU General Public License v3.0

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Closed mbstadler closed 3 years ago

mbstadler commented 4 years ago

re-implement sequence-composition-corrected motif counting, as in findMotifsGenome.pl from HOMER This would make monaLisa independent of Homer, avoid the re-scanning of sequences for each bin, make it easier to install/use the package and submit to bioc

machlabd commented 3 years ago

Shall we close this issue?

mbstadler commented 3 years ago

Yes, either now with a reference to the branch, or later when we merge this branch into master.

machlabd commented 3 years ago

Ok, let's do it when we merge into master then.

mbstadler commented 3 years ago