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fmicompbio / monaLisa

binned motif enrichment analysis and visualisation
https://fmicompbio.github.io/monaLisa/
GNU General Public License v3.0
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Rand lasso deterministic #42

Closed machlabd closed 3 years ago

machlabd commented 3 years ago

set mc.cores=1 in randLassoStabSel(), so that it is deterministic when setting the seed before using the function. We also added a test that makes sure this is deterministic, and an example in the help page of the function and the vignette (both not run due to errors on GHA in windows machine) to illustrate how to reproducibly use the function in parallel mode.

codecov[bot] commented 3 years ago

Codecov Report

Merging #42 (629ce5b) into master (4497a8c) will not change coverage. The diff coverage is 100.00%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #42   +/-   ##
=======================================
  Coverage   99.51%   99.51%           
=======================================
  Files          13       13           
  Lines        2041     2041           
=======================================
  Hits         2031     2031           
  Misses         10       10
Impacted Files Coverage Δ
R/stability_selection.R 100.00% <100.00%> (ø)

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