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fmicompbio / monaLisa

binned motif enrichment analysis and visualisation
https://fmicompbio.github.io/monaLisa/
GNU General Public License v3.0
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how to set the text size of the motif names in plotMotifHeatmaps function? #63

Closed xflicsu closed 1 year ago

mbstadler commented 1 year ago

I have added a modification (see #64) to monaLisa version 1.7.1 (current devel branch of Bioconductor) that allows you to modify the motif name text size using:

plotMotifHeatmaps(..., row_names_gp = gpar(fontsize = 12))

The ... argument has been existing for plotMotifHeatmaps to forward additional parameters to ComplexHeatmap::Heatmap for the main heatmap, but modifying motif names did not work in versions 1.7.0 and before as the motif names are provided by a separate heatmap (one that is used to optionally highlight some of the motifs).

In version 1.7.1, the additional arguments are now forwarded to all ComplexHeatmap::Heatmap calls, and thus changing motif name size is now working as expected.

This feature will become available with monalLisa version 1.8.0 upon release of Bioconductor 3.18 around mid-October 2023. If you want to already use it now, you can use Bioconductor 3.18 (devel) branch as described here: https://contributions.bioconductor.org/use-devel.html (preferred) or install monaLisa directly from GitHub using remotes::install_github('fmicompbio/monaLisa') (easier now, but not recommended as it will leave you with a mixture of release and devel packages in your library).

Please let me know if that resolves your issue.

mbstadler commented 1 year ago

I will close the issue for the moment. Please feel free to re-open it if needed.