QC over large datasets

[educhicano]

Hi Melanie, well, more than an issue, this is a mix between issues/questions/doubts: I'm trying to perform a QC over my datasets but I cannot do it with files over 2gb because it points me to use my ftp account in galaxy. But, I cannot access the ftp (or I can't be able to configure it). I tried all I've read over google but it still doesn't work. how can I use those huge files with QC with my local copy of your docker container? I tried to use those files in usegalaxy.eu but it gives me other error (files doesn't load in the history). Thanks for your time!

[foellmelanie]

ping @bgruening

[bgruening]

I tried to use those files in usegalaxy.eu but it gives me other error (files doesn't load in the history).

Can you send me the error report? I need to investigate this. @foellmelanie training worked well last week with this server.

I cannot do it with files over 2gb because it points me to use my ftp account in galaxy

This should work now, you can upload bigger files then 2GB.

But, I cannot access the ftp (or I can't be able to configure it)

How do you start the Docker container? Please note you need to open the port as well, e.g. with -p 8021:21

Hope that helps! Bjoern

[educhicano]

Hi, thanks both for your kindly support. I've tried now and it seems to work properly. I don't know why it doesn't worked yesterday Nevertheless, answering your question @bgruening : I start the docker container following @foellmelanie 's readme: docker run -i -t -p 8080:80 mcfoell/galaxy-msi. It starts properly and analyze all imzML files under 2gb. How can I configure this container in order to have access to my galaxy ftp account?

This was the error that was generated yesterday:

Job ID	5573429 (4009568a50a57456)
Tool ID	upload1
Tool Version	1.1.6
Job PID or DRM id	None
Job Tool Version	None

[bgruening]

Hi, try docker run -i -t -p 8080:80 -p 8081:21 mcfoell/galaxy-msi and connect to your FTP server on localhost and port 8021 :)