foerstner-lab HiCsuntdracones issues

foerstner-lab / HiCsuntdracones

HiC sunt dracones - or HiCDS in short - Your little helper for the HiC analysis

ISC License

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added scripts section to setup.py

#38 bgbrink opened 3 years ago
0
mHiC2homer addition

#37 bgbrink closed 4 years ago
1
v0.2.0 added mHiC2homer

#36 bgbrink closed 4 years ago
0
Add chromosome bin names to interactive heatmaps when rotate parameter is supplied

#35 elhossary opened 5 years ago
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in Heatmap, differential paramter does not work properly when supplied with rotate parameter

#34 elhossary opened 5 years ago
0
bokeh, gffutils, jinja2 is using a way of importing which depreciated and will stop working in python 3.8

#33 elhossary closed 2 years ago
3
fix FutureWarning: read_table is deprecated, use read_csv instead

#32 elhossary closed 5 years ago
0
adjust and unify script arguments names (long and short)

#31 elhossary closed 5 years ago
0
Inherit diffcolocalization from colocalization

#30 elhossary closed 5 years ago
0
Generate interactive heatmaps with Holoviews with backend bokeh

#29 elhossary closed 5 years ago
0
Put missing requirements

#28 elhossary closed 5 years ago
0
Replace pandas's .ix by .loc/.iloc (as deprecated)

#27 konrad closed 5 years ago
0
Add autocompletion for subcommand and parameters (for bash and zsh)

#26 konrad closed 5 years ago
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Automatize transfer of parameter documentation into sphinx

#25 Lauramueller opened 5 years ago
0
Create tool for scaffolding of bins

#24 Lauramueller opened 5 years ago
0
Add test for colocalization

#23 konrad opened 5 years ago
1
Include ploidy normalization script as subcommand

#22 konrad closed 5 years ago
1
Handle UserWarnings - Should not be passed unfiltered to user

#21 konrad closed 5 years ago
0
normalize_by_columns_sum: Add inplace parameter

#20 konrad closed 5 years ago
1
Add support for piping the subcommands

#19 konrad opened 5 years ago
0
Add support of regular expression or globing for HicMatrix.select()

#18 konrad closed 5 years ago
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Function to plot histogram of reads per bins of matrix

#17 konrad opened 5 years ago
1
Use the RTD them for Sphinx

#16 konrad opened 5 years ago
0
Generate test workflow for documentation and system test

#15 konrad opened 5 years ago
0
Generate Make function to generate and submit new documentation to Read The Docs

#14 konrad opened 5 years ago
0
Clarify if we should host it as a service

#13 Lauramueller opened 5 years ago
0
Add citation information

#12 konrad opened 6 years ago
1
Decide with branching workflow to use

#11 konrad closed 5 years ago
0
Generate package for pypi

#10 konrad opened 6 years ago
0
Remove unnecessary stuff introduced by cookiecutter template

#9 konrad opened 6 years ago
0
Add project to Travis CI for running the tests.

#8 konrad opened 6 years ago
0
Add command for test coverage calculation to Makefile

#7 konrad closed 6 years ago
1
Get overview of missing tests

#6 konrad closed 5 years ago
0
Generate medium size test matrix

#5 konrad closed 5 years ago
1
Convert strings to f-strings

#4 konrad closed 5 years ago
0
Generate page on Read the Docs

#3 konrad opened 6 years ago
0
Document API

#2 konrad opened 6 years ago
0
Improve Usage docs

#1 konrad opened 6 years ago
0