Mapping unaligned reads with lack should be removed

foerstner-lab / READemption

A pipeline for the computational evaluation of RNA-Seq data

https://reademption.readthedocs.io

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Mapping unaligned reads with lack should be removed #26

Closed elhossary closed 2 years ago

elhossary commented 4 years ago

In align subcommand, there is an option to align unmapped reads with lack. This is not anymore valid with Segemehl v3 because it's removed from Segemehl. Therefore this option should be removed from the subcommand arguments