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foerstner-lab / READemption

A pipeline for the computational evaluation of RNA-Seq data
https://reademption.readthedocs.io
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Getting AttributeError: 'Namespace' object has no attribute 'realign' error #29

Closed max1c closed 3 years ago

max1c commented 3 years ago

I installed all dependencies with conda.

$ reademption align -p 4 --poly_a_clipping -f READemption_analysis Traceback (most recent call last): File "/apps/reademption/1.0.0/bin/reademption", line 315, in main() File "/apps/reademption/1.0.0/bin/reademption", line 22, in main args.func(controller) File "/apps/reademption/1.0.0/bin/reademption", line 288, in align_reads controller.align_reads() File "/apps/reademption/1.0.0/lib/python3.8/site-packages/reademptionlib/controller.py", line 83, in align_reads if not self._args.realign: AttributeError: 'Namespace' object has no attribute 'realign'

Tillsa commented 3 years ago

Hello, Thank you for reporting the bug and sorry for your inconvenience. I fixed the error and released version 1.0.1 Please install version 1.0.1 and you should be able to run the example analysis without errors. Best regards, Till

max1c commented 3 years ago

Thanks for the update. It looks like it's working now.

Tillsa commented 3 years ago

Great!