Open termithorbor opened 2 months ago
Hi,
how do I assign the libraries for paired end data in the reademption deseq command?
The names of my reads are like this:
1-hour-1A_p1.fq 1-hour-1A_p2.fq 1-hour-2A_p1.fq 1-hour-2A_p2.fq
Where p1 are the forward and p2 the reverse reads.
Do I have to wirte: a) --libs 1-hour-1A,1-hour-2A or b) --libs 1-hour-1A_p1.fq,1-hour-1A_p2.fq,1-hour-2A_p1.fq,1-hour-2A_p2.fq
I would assume a) but a statement in the manual would be very helpful since the examples are solely for single end data.
Thanks in advance, Thorben
Hello @termithorbor
It is option a)
And thank you for pointing out that the documentation is missing a paired end data example, we will fix this.
Best, Till
Hi,
how do I assign the libraries for paired end data in the reademption deseq command?
The names of my reads are like this:
1-hour-1A_p1.fq 1-hour-1A_p2.fq 1-hour-2A_p1.fq 1-hour-2A_p2.fq
Where p1 are the forward and p2 the reverse reads.
Do I have to wirte: a) --libs 1-hour-1A,1-hour-2A or b) --libs 1-hour-1A_p1.fq,1-hour-1A_p2.fq,1-hour-2A_p1.fq,1-hour-2A_p2.fq
I would assume a) but a statement in the manual would be very helpful since the examples are solely for single end data.
Thanks in advance, Thorben