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fonsp / Pluto.jl

🎈 Simple reactive notebooks for Julia
https://plutojl.org/
MIT License
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Trouble Displaying DataFrame #1407

Closed Dale-Black closed 3 years ago

Dale-Black commented 3 years ago

I am trying to run the example code given in the ImageComponentAnalysis.jl Documentation and Pluto is having trouble displaying the dataframe

The error is:

Failed to show value:

MethodError: no method matching length(::Tables.ColumnsRow{NamedTuple{(:l, :Q₀, :Q₁, :Q₂, :Q₃, :Q₄, :Qₓ, :area, :perimeter₀, :perimeter₁), Tuple{Vector{Int64}, Vector{Int64}, Vector{Int64}, Vector{Int64}, Vector{Int64}, Vector{Int64}, Vector{Int64}, Vector{Float64}, Vector{Float64}, Vector{Int64}}}})

Closest candidates are:

length(!Matched::Union{Base.KeySet, Base.ValueIterator}) at abstractdict.jl:58

length(!Matched::Union{ArrayInterface.BidiagonalIndex, ArrayInterface.TridiagonalIndex, ArrayInterface.BandedBlockBandedMatrixIndex, ArrayInterface.BandedMatrixIndex, ArrayInterface.BlockBandedMatrixIndex}) at /Users/daleblack/.julia/packages/ArrayInterface/WkJyJ/src/array_index.jl:209

length(!Matched::Union{IterTools.Properties, IterTools.PropertyValues}) at /Users/daleblack/.julia/packages/IterTools/0dYLc/src/IterTools.jl:1003

...

table_data(::DataFrames.DataFrame, ::IOContext{IOBuffer})@PlutoRunner.jl:1084
show_richest(::IOContext{IOBuffer}, ::Any)@PlutoRunner.jl:758
var"#sprint_withreturned#32"(::IOContext{Base.DevNull}, ::Int64, ::typeof(Main.PlutoRunner.sprint_withreturned), ::Function, ::DataFrames.DataFrame)@PlutoRunner.jl:708
format_output_default(::Any, ::Any)@PlutoRunner.jl:632
#format_output#21@PlutoRunner.jl:649[inlined]
formatted_result_of(::Base.UUID, ::Bool, ::Nothing, ::Module)@PlutoRunner.jl:565
top-level scope@none:1

And the full pluto notebook is:

### A Pluto.jl notebook ###
# v0.15.1

using Markdown
using InteractiveUtils

# ╔═╡ 1c9035cc-db13-4d3e-89b8-7fa1a8163741
using TestImages, ImageComponentAnalysis, ImageBinarization, ImageIO, Images

# ╔═╡ c80ee6d8-053a-11ec-022e-1522d7363cac
begin
    img_test = binarize(testimage("cameraman"), Otsu())
    components = Images.label_components(img_test)
    measurements = analyze_components(
        components,
        BasicMeasurement(area = true, perimeter = true)
    )
end

# ╔═╡ 00000000-0000-0000-0000-000000000001
PLUTO_PROJECT_TOML_CONTENTS = """
[deps]
ImageBinarization = "cbc4b850-ae4b-5111-9e64-df94c024a13d"
ImageComponentAnalysis = "d9b9e9a0-1569-11e9-2cb5-bbca914b0e89"
ImageIO = "82e4d734-157c-48bb-816b-45c225c6df19"
Images = "916415d5-f1e6-5110-898d-aaa5f9f070e0"
TestImages = "5e47fb64-e119-507b-a336-dd2b206d9990"

[compat]
ImageBinarization = "~0.2.7"
ImageComponentAnalysis = "~0.1.0"
ImageIO = "~0.5.8"
Images = "~0.24.1"
TestImages = "~1.6.1"
"""

# ╔═╡ 00000000-0000-0000-0000-000000000002
PLUTO_MANIFEST_TOML_CONTENTS = """
# This file is machine-generated - editing it directly is not advised

[[AbstractFFTs]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "485ee0867925449198280d4af84bdb46a2a404d0"
uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
version = "1.0.1"

[[Adapt]]
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git-tree-sha1 = "84918055d15b3114ede17ac6a7182f68870c16f7"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "3.3.1"

[[ArgTools]]
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[[ArrayInterface]]
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uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
version = "3.1.24"

[[Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"

[[AxisAlgorithms]]
deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"]
git-tree-sha1 = "a4d07a1c313392a77042855df46c5f534076fab9"
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[[AxisArrays]]
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[[Base64]]
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[[CEnum]]
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[[CatIndices]]
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[[CategoricalArrays]]
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[[ChainRulesCore]]
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[[ColorTypes]]
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[[ColorVectorSpace]]
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[[Colors]]
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[[Compat]]
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git-tree-sha1 = "b0b7e8a0d054fada22b64095b46469627a138943"
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[[CompilerSupportLibraries_jll]]
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[[ComputationalResources]]
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[[CoordinateTransformations]]
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[[CustomUnitRanges]]
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[[DataAPI]]
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[[DataFrames]]
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git-tree-sha1 = "271528230c65a4517522e2968c3deed76b92b998"
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[[DataFramesMeta]]
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[[DataStructures]]
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[[DataValueInterfaces]]
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[[Dates]]
deps = ["Printf"]
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[[DelimitedFiles]]
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uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"

[[Distances]]
deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
git-tree-sha1 = "abe4ad222b26af3337262b8afb28fab8d215e9f8"
uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
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[[Distributed]]
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[[DocStringExtensions]]
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git-tree-sha1 = "a32185f5428d3986f47c2ab78b1f216d5e6cc96f"
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[[Downloads]]
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uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"

[[EllipsisNotation]]
deps = ["ArrayInterface"]
git-tree-sha1 = "8041575f021cba5a099a456b4163c9a08b566a02"
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version = "1.1.0"

[[ExprTools]]
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[[FFTViews]]
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[[FFTW]]
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[[FFTW_jll]]
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[[FileIO]]
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[[FixedPointNumbers]]
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[[Future]]
deps = ["Random"]
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[[Graphics]]
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git-tree-sha1 = "2c1cf4df419938ece72de17f368a021ee162762e"
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[[HistogramThresholding]]
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[[IdentityRanges]]
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[[IfElse]]
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[[ImageAxes]]
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[[ImageBinarization]]
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[[ImageComponentAnalysis]]
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[[ImageContrastAdjustment]]
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[[ImageCore]]
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[[ImageDistances]]
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git-tree-sha1 = "6378c34a3c3a216235210d19b9f495ecfff2f85f"
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[[ImageFiltering]]
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git-tree-sha1 = "bf96839133212d3eff4a1c3a80c57abc7cfbf0ce"
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version = "0.6.21"

[[ImageIO]]
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version = "0.5.8"

[[ImageMagick]]
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[[ImageMagick_jll]]
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[[ImageMetadata]]
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[[ImageMorphology]]
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[[ImageQualityIndexes]]
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[[ImageShow]]
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[[ImageTransformations]]
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uuid = "02fcd773-0e25-5acc-982a-7f6622650795"
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[[Images]]
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git-tree-sha1 = "8b714d5e11c91a0d945717430ec20f9251af4bd2"
uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0"
version = "0.24.1"

[[Imath_jll]]
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git-tree-sha1 = "87f7662e03a649cffa2e05bf19c303e168732d3e"
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[[IndirectArrays]]
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[[Inflate]]
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[[IntelOpenMP_jll]]
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[[InteractiveUtils]]
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uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[Interpolations]]
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git-tree-sha1 = "61aa005707ea2cebf47c8d780da8dc9bc4e0c512"
uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
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[[IntervalSets]]
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[[Intervals]]
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uuid = "d8418881-c3e1-53bb-8760-2df7ec849ed5"
version = "1.5.0"

[[InvertedIndices]]
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uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
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[[IrrationalConstants]]
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[[IterTools]]
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uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
version = "1.3.0"

[[IteratorInterfaceExtensions]]
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uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"

[[JLLWrappers]]
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[[nghttp2_jll]]
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[[p7zip_jll]]
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uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
"""

# ╔═╡ Cell order:
# ╠═1c9035cc-db13-4d3e-89b8-7fa1a8163741
# ╠═c80ee6d8-053a-11ec-022e-1522d7363cac
# ╟─00000000-0000-0000-0000-000000000001
# ╟─00000000-0000-0000-0000-000000000002
zygmuntszpak commented 3 years ago

I think part of the problem is that it has been ages since I tagged a new release of the package. The released version is using an ancient version of DataFrames. Perhaps you could check out the master branch and try with that? Looking back at the commits, I see that I upgraded to a later (but still relatively old) version of DataFrames on master. Actually, I really need to update all the Compat bounds in the Project.toml file.

I'm in the process of reviving the package and intend to add a bunch more functionality, hence the reason why I happened to stumble on this issue you opened here.

fonsp commented 3 years ago

Thanks for the help @zygmuntszpak ! Let's move this issue to ICA.jl? If you are correct, and the dataframes display problem only exists for old versions, then it's probably not worth the effort to fix it on the Pluto side.

Closing for now but feel free to re-open!