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footie11 / mzidentml-viewer

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Number of peptides in Protein and Protein Group table is misleading... #6

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?

1. Load an mzid file with PeptideHypothesis elements, for which the identified 
peptides occur in multiple charge states or in multiple modification forms.

What is the expected output? What do you see instead?

The number of distinct peptide sequences, regardless of modification or charge 
state(s). PeptideEvidence elements capture modification and charge state, so it 
is not enough to count PeptideHypothesis elements. (ProeoIDViewer:711 and 
multiple other places).

What version of the product are you using? On what operating system?

1.3. Windows.

Please provide any additional information below.

Original issue reported on code.google.com by edward...@gmail.com on 11 Feb 2014 at 9:05