The plant sRNA portal is an online resource integrating a workflow for identifying, predicting and annotating plant small RNAs (sRNA), and a database to store sRNA datasets with standardized metadata. The workflow (miRPursuit) is based on publicly available tools and allows the automated sequential application of data processing modules for analysis of sRNA datasets, including data preprocessing, filtering, annotation and reporting output. Additionally, tools for downstream analysis, such as expression matrix and prediction of sRNA target genes are integrated in the workflow. The database will work as a repository of the miRPursuit annotated sRNAs and other publicly available sRNAs, focusing mainly on woody plant data.
Release notes
*Sourced from [sequelize's releases](https://github.com/sequelize/sequelize/releases).*
> ## v5.15.1
> ## [5.15.1](https://github.com/sequelize/sequelize/compare/v5.15.0...v5.15.1) (2019-08-18)
>
>
> ### Security
>
> * **sequelize.json.fn:** use common path extraction for mysql/mariadb/sqlite ([#11329](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11329)) ([9bd0bc1](https://github.com/sequelize/sequelize/commit/9bd0bc1))
>
> This fixes a security issue with `sequelize.json()` for MySQL. Old code was still used for formatting sub paths for json queries when used with `sequelize.json()` helper function
>
> Example of attack vector
>
> ```js
> return User.findAll({
> where: sequelize.json("data.id')) AS DECIMAL) = 1 DELETE YOLO INJECTIONS; -- ", 1)
> });
> ```
>
> Thanks to [@Kirill89](https://github.com/Kirill89) from Snyk Security Research Team for reporting this issue.
>
> ## v5.15.0
> # [5.15.0](https://github.com/sequelize/sequelize/compare/v5.14.0...v5.15.0) (2019-08-14)
>
>
> ### Features
>
> * **associations:** source and target key support for belongs-to-many ([#11311](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11311)) ([83e263b](https://github.com/sequelize/sequelize/commit/83e263b))
>
> ## v5.14.0
> # [5.14.0](https://github.com/sequelize/sequelize/compare/v5.13.1...v5.14.0) (2019-08-13)
>
>
> ### Features
>
> * support include option in bulkInsert ([#11307](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11307)) ([4f09899](https://github.com/sequelize/sequelize/commit/4f09899))
>
> ## v5.13.1
> ## [5.13.1](https://github.com/sequelize/sequelize/compare/v5.13.0...v5.13.1) (2019-08-11)
>
>
> ### Bug Fixes
>
> * **count:** fix null count with includes ([#11295](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11295)) ([592099d](https://github.com/sequelize/sequelize/commit/592099d))
>
> ## v5.13.0
> # [5.13.0](https://github.com/sequelize/sequelize/compare/v5.12.3...v5.13.0) (2019-08-09)
>
>
> ### Bug Fixes
>
> ... (truncated)
Commits
- [`9bd0bc1`](https://github.com/sequelize/sequelize/commit/9bd0bc111b6f502223edf7e902680f7cc2ed541e) fix(sequelize.json.fn): use common path extraction for mysql/mariadb/sqlite (...
- [`83e263b`](https://github.com/sequelize/sequelize/commit/83e263bd4f97860e37cfd8c4a69995a3901b9264) feat(associations): source and target key support for belongs-to-many ([#11311](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11311))
- [`4f09899`](https://github.com/sequelize/sequelize/commit/4f0989987730b61d2a992653819bc63aaefd94a8) feat: support include option in bulkInsert ([#11307](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11307))
- [`de06ac3`](https://github.com/sequelize/sequelize/commit/de06ac3fd714f7c7eeb10db5774724007928f0c1) docs(security): grammar mistakes
- [`29eb1c8`](https://github.com/sequelize/sequelize/commit/29eb1c85ad00201e8b036ab492b7d418fa706606) docs(security): add responsible disclosure policy ([#11300](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11300))
- [`592099d`](https://github.com/sequelize/sequelize/commit/592099dd7b5078bdc6deccbdd19be0e02f38cfd6) fix(count): fix null count with includes ([#11295](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11295))
- [`80d3625`](https://github.com/sequelize/sequelize/commit/80d362578c94da6c961f2d08e32df19cdecec3f7) docs(query-interface): fix typo with remove-column parameter ([#11294](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11294))
- [`a39c63a`](https://github.com/sequelize/sequelize/commit/a39c63a44201e13a44a75e6acd7ba3b08d7643d7) fix(types): return a usable type when using the sequelize.models lookup ([#11293](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11293))
- [`98a4089`](https://github.com/sequelize/sequelize/commit/98a40891effb8ae8d76ad1c091414e906f38cca9) fix(types): use correct `this` value in getterMethods and setterMethods ([#11292](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11292))
- [`dd428a0`](https://github.com/sequelize/sequelize/commit/dd428a06d32a39273b3cfb018214f7cfa372e4ac) refactor(association): name model that association is missing from ([#11290](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11290))
- Additional commits viewable in [compare view](https://github.com/sequelize/sequelize/compare/v4.39.0...v5.15.1)
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You can disable automated security fix PRs for this repo from the [Security Alerts page](https://github.com/forestbiotech-lab/sRNA-Portal-workflow/network/alerts).
dependabot[bot]
commented
4 years ago
Bumps sequelize from 4.39.0 to 5.15.1.
Release notes
*Sourced from [sequelize's releases](https://github.com/sequelize/sequelize/releases).* > ## v5.15.1 > ## [5.15.1](https://github.com/sequelize/sequelize/compare/v5.15.0...v5.15.1) (2019-08-18) > > > ### Security > > * **sequelize.json.fn:** use common path extraction for mysql/mariadb/sqlite ([#11329](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11329)) ([9bd0bc1](https://github.com/sequelize/sequelize/commit/9bd0bc1)) > > This fixes a security issue with `sequelize.json()` for MySQL. Old code was still used for formatting sub paths for json queries when used with `sequelize.json()` helper function > > Example of attack vector > > ```js > return User.findAll({ > where: sequelize.json("data.id')) AS DECIMAL) = 1 DELETE YOLO INJECTIONS; -- ", 1) > }); > ``` > > Thanks to [@Kirill89](https://github.com/Kirill89) from Snyk Security Research Team for reporting this issue. > > ## v5.15.0 > # [5.15.0](https://github.com/sequelize/sequelize/compare/v5.14.0...v5.15.0) (2019-08-14) > > > ### Features > > * **associations:** source and target key support for belongs-to-many ([#11311](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11311)) ([83e263b](https://github.com/sequelize/sequelize/commit/83e263b)) > > ## v5.14.0 > # [5.14.0](https://github.com/sequelize/sequelize/compare/v5.13.1...v5.14.0) (2019-08-13) > > > ### Features > > * support include option in bulkInsert ([#11307](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11307)) ([4f09899](https://github.com/sequelize/sequelize/commit/4f09899)) > > ## v5.13.1 > ## [5.13.1](https://github.com/sequelize/sequelize/compare/v5.13.0...v5.13.1) (2019-08-11) > > > ### Bug Fixes > > * **count:** fix null count with includes ([#11295](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11295)) ([592099d](https://github.com/sequelize/sequelize/commit/592099d)) > > ## v5.13.0 > # [5.13.0](https://github.com/sequelize/sequelize/compare/v5.12.3...v5.13.0) (2019-08-09) > > > ### Bug Fixes > > ... (truncated)Commits
- [`9bd0bc1`](https://github.com/sequelize/sequelize/commit/9bd0bc111b6f502223edf7e902680f7cc2ed541e) fix(sequelize.json.fn): use common path extraction for mysql/mariadb/sqlite (... - [`83e263b`](https://github.com/sequelize/sequelize/commit/83e263bd4f97860e37cfd8c4a69995a3901b9264) feat(associations): source and target key support for belongs-to-many ([#11311](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11311)) - [`4f09899`](https://github.com/sequelize/sequelize/commit/4f0989987730b61d2a992653819bc63aaefd94a8) feat: support include option in bulkInsert ([#11307](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11307)) - [`de06ac3`](https://github.com/sequelize/sequelize/commit/de06ac3fd714f7c7eeb10db5774724007928f0c1) docs(security): grammar mistakes - [`29eb1c8`](https://github.com/sequelize/sequelize/commit/29eb1c85ad00201e8b036ab492b7d418fa706606) docs(security): add responsible disclosure policy ([#11300](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11300)) - [`592099d`](https://github.com/sequelize/sequelize/commit/592099dd7b5078bdc6deccbdd19be0e02f38cfd6) fix(count): fix null count with includes ([#11295](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11295)) - [`80d3625`](https://github.com/sequelize/sequelize/commit/80d362578c94da6c961f2d08e32df19cdecec3f7) docs(query-interface): fix typo with remove-column parameter ([#11294](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11294)) - [`a39c63a`](https://github.com/sequelize/sequelize/commit/a39c63a44201e13a44a75e6acd7ba3b08d7643d7) fix(types): return a usable type when using the sequelize.models lookup ([#11293](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11293)) - [`98a4089`](https://github.com/sequelize/sequelize/commit/98a40891effb8ae8d76ad1c091414e906f38cca9) fix(types): use correct `this` value in getterMethods and setterMethods ([#11292](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11292)) - [`dd428a0`](https://github.com/sequelize/sequelize/commit/dd428a06d32a39273b3cfb018214f7cfa372e4ac) refactor(association): name model that association is missing from ([#11290](https://github-redirect.dependabot.com/sequelize/sequelize/issues/11290)) - Additional commits viewable in [compare view](https://github.com/sequelize/sequelize/compare/v4.39.0...v5.15.1)Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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