forlilab / waterkit

Tool to predict water molecules placement and energy in ligand binding sites
GNU General Public License v3.0
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documentation on output files from waterkit #17

Closed blakemertz closed 4 months ago

blakemertz commented 4 months ago

After getting waterkit to successfully complete on a sample protein, the following files are produced:

gist-Esw-dens.dx
gist-Eww-dens.dx
gist-dTStrans-dens.dx
gist-dTSorient-dens.dx
gist-dTSsix-dens.dx
gist-neighbor-norm.dx
gist-dipole-dens.dx
gist-order-norm.dx
gist-dipolex-dens.dx
gist-dipoley-dens.dx
gist-dipolez-dens.dx
gist-gO.dx
gist-output.dat
gist-gH.dx
hydration.py
hydration_sites_dG_smoothed.pdb
gist-dG-dens_smoothed.dx

I know how to load and visualize the pdb/dx files, but I was wondering if there is any documentation describing each of the dx files, or if there is none, could it be provided?

diogomart commented 4 months ago

it's in the GIST documentation: https://amberhub.chpc.utah.edu/gist/

blakemertz commented 4 months ago

@diogomart thanks!