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Any chance to make it available via conda or singularity? #2

Closed AntonioBaeza closed 8 months ago

AntonioBaeza commented 11 months ago

Any chance to make it available via conda or singularity? thanks

wtroy2 commented 11 months ago

There are no plans for conda as that would be a large endeavor but singularity is possible and useful for running on clusters. Is this your use case?

AntonioBaeza commented 11 months ago

yes, correct. Singularity will be great. I do not have super user privileges.

wtroy2 commented 11 months ago

Ok. This can most likely be done. There's a chance I get to it next week but if not it may be a few weeks due to travel starting at the end of next week. I will be sure to keep this issue updated as it goes.

AntonioBaeza commented 11 months ago

thanks, no problem, completely understand and I will stay alert, thanks!

brantfaircloth commented 11 months ago

Excited about this approach - thanks for your work on it! +1 for the option to use Singularity.

wtroy2 commented 11 months ago

Just to keep you all updated. It's not looking like I'll be able to get to it this week. So it will be a few weeks before I get to it due to going out of town

wtroy2 commented 10 months ago

For singularity can you guys use GPUs or is it preferred without? Helixer prefers to use gpus

AntonioBaeza commented 10 months ago

I do not have GPUs unfortunately

wtroy2 commented 10 months ago

Ok that was my guess but just trying to get it right the first time because singularity has been a little more difficult than expected

wtroy2 commented 9 months ago

after a VERY long wait singularity support was added and gpus were removed so it is entirely cpus

wtroy2 commented 8 months ago

Closing this issue as I think its been solved and there's been no activity on this issue for awhile