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formbio / laava

LAAVA: Long-read AAV Analysis
MIT License
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Test in README.md fails #11

Closed krobison13 closed 4 months ago

krobison13 commented 4 months ago

Supplied test does not work

laava/test$ make
../src/prepare_annotation.py small/annotation.bed small/reference_names.tsv -o build/small.annotation.txt
Traceback (most recent call last):
  File "laava/test/../src/prepare_annotation.py", line 142, in <module>
    write_annotation_txt(args.output, bed_rows, otr_rows)
  File "laava/test/../src/prepare_annotation.py", line 99, in write_annotation_txt
    with open(out_fname, "w+") as outf:
FileNotFoundError: [Errno 2] No such file or directory: 'build/small.annotation.txt'
make: *** [Makefile:24: build/small.annotation.txt] Error 1
etal commented 4 months ago

Whoopsie. Here's a fix on a branch: #15

Thanks for reporting!