Currently the script create_report.R runs Rmarkdown to create both HTML and PDF copies of the output report. Instead, let the user specify which of these formats (or both) to generate.
Change create_report.R to accept the output format as an input parameter -- either a single value, where the workflow may run the script multiple times, or multiple values, where the script itself generates each of the specified formats.
Change the workflow and all internal scripts involved to take the output report formats as an input parameter and pass them through to create_report.R.
Currently the script
create_report.Rruns Rmarkdown to create both HTML and PDF copies of the output report. Instead, let the user specify which of these formats (or both) to generate.create_report.Rto accept the output format as an input parameter -- either a single value, where the workflow may run the script multiple times, or multiple values, where the script itself generates each of the specified formats.create_report.R.