Closed michelledayusfs closed 1 year ago
It looks like patchmax is now requiring this (looking at the forsys code). Can this be run without it?
I pushed a new forsys update that should fix this issue. @michelledayusfs can you confirm?
Still getting the error, and I did a pull request, restarted R and then cleaned and rebuilt.
Error in patchmax::simulate_projects(geom = geom, St_id = pull_field(geom, : unused arguments (P_ceiling = pull_field(geom, global_ceiling_field), P_ceiling_max = global_ceiling_value)
Did you also pull and rebuild patchmax? Looks like the problem is within the patchmax package
Message ID: @.***>
No. Github said it wasn't updated, and I checked on line. Did you push your changes?
My bad :-( Just pushed. Sorry for the headache... On Jan 31, 2023 at 8:51 AM -0800, Michelle Day @.***>, wrote:
No. Github said it wasn't updated, and I checked on line. Did you push your changes? — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were assigned.Message ID: @.***>
It won't clean and rebuild. Looks like the same error I got before. Can you check on your end?
Works on my end. Can you attach your script just so I can confirm?
This what I'm using...
shp <- st_read("~/Downloads/SERAL_sample/SERAL_sample.shp") %>%
calculate_pcp(fields = c('Am4RevBio','prob_8p','res_depart')) %>%
combine_priorities(
fields = c('Am4RevBio_PCP','prob_8p_PCP','res_depart_PCP'),
weights = c(1,1,1),
new_field = 'preset_priority')
run_outputs_preset = forsys::run(
return_outputs = TRUE,
write_outputs = TRUE,
stand_data = shp,
scenario_name = "patchmax_forsys_preset",
stand_id_field = "LMU_ID",
stand_area_field = "Acres",
global_threshold = 'OwnerClass == "USDA FOREST SERVICE"',
scenario_priorities = c("preset_priority"),
scenario_output_fields = c("Acres", "Am4RevBio_PCP", "prob_8p_PCP", "res_depart_PCP"),
run_with_patchmax = TRUE,
patchmax_proj_size = 500,
patchmax_proj_number = 3,
patchmax_SDW = 1,
patchmax_EPW = 0,
patchmax_sample_frac = 1
)
On Jan 31, 2023 at 9:02 AM -0800, Michelle Day @.***>, wrote:
It won't clean and rebuild. Looks like the same error I got before. Can you check on your end? — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were assigned.Message ID: @.***>
I cannot update patchmax: ** byte-compile and prepare package for lazy loading Error : package or namespace load failed for 'patchmax' in loadNamespace(package, lib.loc): cyclic namespace dependency detected when loading 'patchmax', already loading 'patchmax' Error: unable to load R code in package 'patchmax' Execution halted ERROR: lazy loading failed for package 'patchmax'
Exited with status 1.
OK, I think I fixed this. Try pulling and building patchmax one more time. On Jan 31, 2023 at 9:25 AM -0800, Michelle Day @.***>, wrote:
Error : package or namespace load failed for 'patchmax' in loadNamespace(package, lib.loc): cyclic namespace dependency detected when loading 'patchmax', already loading 'patchmax' Error: unable to load R code in package 'patchmax'
New error:
set.seed(12345)
# Run forsys the original way and filter for the specific priority weighting combo
run_outputs_patchceiling = forsys::run(
return_outputs = TRUE,
write_outputs = TRUE,
stand_data = shp,
scenario_name = "forsys_patchceiling",
stand_id_field = "LMU_ID",
stand_area_field = "Acres",
global_threshold = 'OwnerClass == "USDA FOREST SERVICE"',
scenario_priorities = c("res_depart_SPM"),
scenario_output_fields = c("Acres", "Am4RevBio_PCP", "prob_8p_PCP", "res_depart_PCP"),
run_with_patchmax = TRUE,
patchmax_proj_size = 500,
patchmax_proj_number = 10,
patchmax_SDW = 1,
patchmax_EPW = 0,
patchmax_sample_frac = 0.1,
annual_target_field = "Acres",
annual_target = 2500
)
Writing data to C:/GitHub/forsysr/output/forsys_patchceiling
Subsetting stands where OwnerClass == "USDA FOREST SERVICE" (23.83% excluded)
Weighting scenario 1 of 1: 1
Error in select()
:
! Problem while evaluating all_of(fields)
.
Run rlang::last_error()
to see where the error occurred.
We can screen share in a couple of minutes.
Fixed.
Writing data to C:/GitHub/forsysr/output/patchmax_forsys_preset Subsetting stands where OwnerClass == "USDA FOREST SERVICE" (23.83% excluded) Weighting scenario 1 of 1: 1 Combined priority assigned to weightedPriority Starting year 1 ---------------- Error in patchmax::simulate_projects(geom = geom, St_id = pull(geom, !!stand_id_field), : unused arguments (P_ceiling = pull(geom, !!proj_ceiling_field), P_ceiling_max = proj_ceiling)