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fpbarthel / GLASS

GLASS consortium
MIT License
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GLASS conda environment #129

Closed fsvarn closed 4 years ago

fsvarn commented 5 years ago

Opening an issue for a potential GLASS conda environment to further enhance reproducibility. Packages that need to be explicitly installed to get Snakemake workflows to work include:

snakemake conda install -c bioconda -c conda-forge snakemake psycopg2 conda install -c anaconda psycopg2 drmaa conda install -c anaconda drmaa gatk4 conda install -c bioconda gatk4

Others?

fpbarthel commented 5 years ago

@fsvarn can you draft a yaml module file and include in the envs directory

fsvarn commented 4 years ago

Added the GLASS env to envs/glass.yaml.