Closed fsvarn closed 4 years ago
GLSS-SM-R114-R1 is actually the second recurrence in for this patient. While the first recurrence does not have genomic data associated with it, it does have other data types that will eventually be added to GLASS.
Affected aliquots:
GLSS-SM-R114-R1-01D-WXS-MKCJ7O >> GLSS-SM-R114-R2-01D-WXS-MKCJ7O
To-Do:
biospecimen.samples
samples_type
sample_barcode
samtools view -H OLDBAM | sed -e 's/SM:OLDBARCODE/SM:NEWBARCODE/' | samtools reheader - OLDBAM > NEWBAM
analysis.files
aligned BAM
Will update this sample in future data release if other data types for this sample are added to GLASS.
GLSS-SM-R114-R1 is actually the second recurrence in for this patient. While the first recurrence does not have genomic data associated with it, it does have other data types that will eventually be added to GLASS.
Affected aliquots:
To-Do:
biospecimen.samples
table to switchsamples_type
andsample_barcode
samtools view -H OLDBAM | sed -e 's/SM:OLDBARCODE/SM:NEWBARCODE/' | samtools reheader - OLDBAM > NEWBAM
analysis.files
table to updatealigned BAM
file records to match updated file name and path, new file size and md5