jessvasseur
commented
3 years ago Tutorials https://biocorecrg.github.io/RNAseq_course_2019/differential_expression.html https://shiring.github.io/rna-seq/deseq2/teaching/2016/09/29/DESeq2-course http://bioconductor.org/help/course-materials/2015/CSAMA2015/lab/rnaseqCSAMA.html#eda https://avikarn.com/2020-07-02-RNAseq_DeSeq2/ PCA FactoMineR https://cran.r-project.org/web/packages/FactoMineR/index.html Visualisierung ggplot2 https://tem11010.github.io/Plotting-PCAs/ DESeq2 vs FactoMineR https://www.biostars.org/p/461760/ DEG DESeq2 Vignette http://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#differential-expression-analysis DESeq2 https://bioconductor.org/packages/release/bioc/html/DESeq2.html Volcano Plot ggplot2 https://biocorecrg.github.io/CRG_RIntroduction/volcano-plots.html ggrepel für Label https://cran.r-project.org/web/packages/ggrepel/vignettes/ggrepel.html Visualizations ggplot2 https://hbctraining.github.io/Training-modules/Visualization_in_R/lessons/03_advanced_visualizations.html Heatmaps genefilter https://bioconductor.org/packages/release/bioc/html/genefilter.html pheatmap Package https://cran.r-project.org/web/packages/pheatmap/pheatmap.pdf Anleitung pheatmap https://davetang.org/muse/2018/05/15/making-a-heatmap-in-r-with-the-pheatmap-package/
https://docs.google.com/document/d/1QsKT300QRSah_09pjW3zobDtmofwyONPkuJiXADhtUc/