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fpusan / SuperPang

Non-redundant pangenome assemblies from multiple genomes or bins
BSD 3-Clause "New" or "Revised" License
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input genome position information #16

Open marade opened 3 months ago

marade commented 3 months ago

Perhaps I am missing it, but is there a way to get SuperPang to output the positions in each input genome covered by each SuperPang assembly sequence? While NBP2origins.tsv at least gives the genome(s) of origin, precise position information would be more useful. Thanks!

fpusan commented 3 months ago

This is in my ToDo list, for now you can map the NBPs.fasta file to the input genomes with minimap2. I'll try to release a new versión with this sometime in August.

marade commented 3 months ago

Thanks, sounds good!