NBP2origins.tsv and graph.NBP2origins.csv contain corrupted SourceContig names

fpusan / SuperPang

Non-redundant pangenome assemblies from multiple genomes or bins

BSD 3-Clause "New" or "Revised" License

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NBP2origins.tsv and graph.NBP2origins.csv contain corrupted SourceContig names #17

Closed marade closed 3 months ago

marade commented 3 months ago

A few of the SourceContigs names have only the contig name and not the genome name. So if the original file is named "Acinetobacter_baumannii_XJ42.fna" and the contigs are named "1" and "p1", it comes out as just "1" and "p1" under SourceContigs instead of "Acinetobacter_baumannii_XJ42_1" and "Acinetobacter_baumannii_XJ42_p1". (These are fake names. Possibly the bug only occurs for certain types of names.) For most genomes it works properly, but in a large collection some have this bug.

fpusan commented 3 months ago

Fixed in v1.3.1!

marade commented 3 months ago

Thank you!