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fractal-analytics-platform / fractal-server

Fractal backend
https://fractal-analytics-platform.github.io/fractal-server/
BSD 3-Clause "New" or "Revised" License
11 stars 3 forks source link

The field `timestamp_ended` is always null in `GET /v2/task-group/activity` #2022

Closed zonia3000 closed 2 days ago

zonia3000 commented 5 days ago

I've collected fractal-tasks-core and after the collection completion the timestamp_ended is still null.

Complete response payload:

[
   {
      "id":1,
      "user_id":1,
      "taskgroupv2_id":1,
      "timestamp_started":"2024-11-08T09:54:52.471031+00:00",
      "timestamp_ended":null,
      "pkg_name":"fractal-tasks-core",
      "version":"1.3.2",
      "status":"OK",
      "action":"collect",
      "log":"2024-11-08 10:54:52,479 - task_collection_local - DEBUG - START\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.user_id: 1\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.user_group_id: 1\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.pkg_name: fractal-tasks-core\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.python_version: 3.10\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.venv_path: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.pip_freeze: None\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.pinned_package_versions: {}\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.timestamp_created: 2024-11-08 09:54:52.452009+00:00\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.origin: pypi\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.id: 1\n2024-11-08 10:54:52,479 - task_collection_local - DEBUG - task_group.version: 1.3.2\n2024-11-08 10:54:52,480 - task_collection_local - DEBUG - task_group.path: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2\n2024-11-08 10:54:52,480 - task_collection_local - DEBUG - task_group.wheel_path: None\n2024-11-08 10:54:52,480 - task_collection_local - DEBUG - task_group.pip_extras: None\n2024-11-08 10:54:52,480 - task_collection_local - DEBUG - task_group.active: True\n2024-11-08 10:54:52,480 - task_collection_local - DEBUG - installing - START\n2024-11-08 10:54:52,480 - task_collection_local - DEBUG - task_group_activity_id=1 - set task_group_activity.status to {new_status}\n2024-11-08 10:54:52,499 - task_collection_local - DEBUG - Created /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2\n2024-11-08 10:54:52,499 - task_collection_local - DEBUG - _customize_and_run_template _1_create_venv.sh - START\n2024-11-08 10:54:52,499 - task_collection_local - DEBUG - Now run 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_1_create_venv' \n2024-11-08 10:54:52,499 - task_collection_local - DEBUG - START subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_1_create_venv'\n2024-11-08 10:54:54,776 - task_collection_local - DEBUG - returncode=0\n2024-11-08 10:54:54,776 - task_collection_local - DEBUG - stdout='[collect-task, 2024-11-08T09:54:52Z] START create venv in /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv\\n[collect-task, 2024-11-08T09:54:54Z] END   create venv in /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv\\n\\n[collect-task, 2024-11-08T09:54:54Z] All good up to here.\\n[collect-task, 2024-11-08T09:54:54Z] Elapsed: 2 seconds\\n[collect-task, 2024-11-08T09:54:54Z] Exit.\\n\\n'\n2024-11-08 10:54:54,776 - task_collection_local - DEBUG - stderr=''\n2024-11-08 10:54:54,776 - task_collection_local - DEBUG - END   subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_1_create_venv'\n2024-11-08 10:54:54,777 - task_collection_local - DEBUG - Standard output of 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_1_create_venv':\n[collect-task, 2024-11-08T09:54:52Z] START create venv in /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv\n[collect-task, 2024-11-08T09:54:54Z] END   create venv in /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv\n\n[collect-task, 2024-11-08T09:54:54Z] All good up to here.\n[collect-task, 2024-11-08T09:54:54Z] Elapsed: 2 seconds\n[collect-task, 2024-11-08T09:54:54Z] Exit.\n\n\n2024-11-08 10:54:54,777 - task_collection_local - DEBUG - _customize_and_run_template _1_create_venv.sh - END\n2024-11-08 10:54:54,781 - task_collection_local - DEBUG - _customize_and_run_template _2_preliminary_pip_operations.sh - START\n2024-11-08 10:54:54,782 - task_collection_local - DEBUG - Now run 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_2_preliminary_pip_operations' \n2024-11-08 10:54:54,782 - task_collection_local - DEBUG - START subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_2_preliminary_pip_operations'\n2024-11-08 10:54:57,077 - task_collection_local - DEBUG - returncode=0\n2024-11-08 10:54:57,077 - task_collection_local - DEBUG - stdout='[collect-task, 2024-11-08T09:54:54Z] START upgrade pip\\nRequirement already satisfied: pip<=24.0 in ./Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages (22.0.2)\\nCollecting pip<=24.0\\n  Downloading pip-24.0-py3-none-any.whl (2.1 MB)\\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 13.4 MB/s eta 0:00:00\\nInstalling collected packages: pip\\n  Attempting uninstall: pip\\n    Found existing installation: pip 22.0.2\\n    Uninstalling pip-22.0.2:\\n      Successfully uninstalled pip-22.0.2\\nSuccessfully installed pip-24.0\\nRequirement already satisfied: setuptools in ./Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages (59.6.0)\\n[collect-task, 2024-11-08T09:54:57Z] END   upgrade pip\\n\\n[collect-task, 2024-11-08T09:54:57Z] All good up to here.\\n[collect-task, 2024-11-08T09:54:57Z] Elapsed: 3 seconds\\n[collect-task, 2024-11-08T09:54:57Z] Exit.\\n\\n'\n2024-11-08 10:54:57,077 - task_collection_local - DEBUG - stderr='\\n[notice] A new release of pip is available: 24.0 -> 24.3.1\\n[notice] To update, run: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/bin/python -m pip install --upgrade pip\\n'\n2024-11-08 10:54:57,077 - task_collection_local - DEBUG - END   subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_2_preliminary_pip_operations'\n2024-11-08 10:54:57,077 - task_collection_local - DEBUG - Standard output of 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_2_preliminary_pip_operations':\n[collect-task, 2024-11-08T09:54:54Z] START upgrade pip\nRequirement already satisfied: pip<=24.0 in ./Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages (22.0.2)\nCollecting pip<=24.0\n  Downloading pip-24.0-py3-none-any.whl (2.1 MB)\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 13.4 MB/s eta 0:00:00\nInstalling collected packages: pip\n  Attempting uninstall: pip\n    Found existing installation: pip 22.0.2\n    Uninstalling pip-22.0.2:\n      Successfully uninstalled pip-22.0.2\nSuccessfully installed pip-24.0\nRequirement already satisfied: setuptools in ./Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages (59.6.0)\n[collect-task, 2024-11-08T09:54:57Z] END   upgrade pip\n\n[collect-task, 2024-11-08T09:54:57Z] All good up to here.\n[collect-task, 2024-11-08T09:54:57Z] Elapsed: 3 seconds\n[collect-task, 2024-11-08T09:54:57Z] Exit.\n\n\n2024-11-08 10:54:57,077 - task_collection_local - DEBUG - _customize_and_run_template _2_preliminary_pip_operations.sh - END\n2024-11-08 10:54:57,081 - task_collection_local - DEBUG - _customize_and_run_template _3_pip_install.sh - START\n2024-11-08 10:54:57,082 - task_collection_local - DEBUG - Now run 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_3_pip_install' \n2024-11-08 10:54:57,082 - task_collection_local - DEBUG - START subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_3_pip_install'\n2024-11-08 10:55:17,739 - task_collection_local - DEBUG - returncode=0\n2024-11-08 10:55:17,739 - task_collection_local - DEBUG - stdout=\"[collect-task, 2024-11-08T09:54:57Z] START install fractal-tasks-core==1.3.2\\nCollecting fractal-tasks-core==1.3.2\\n  Downloading fractal_tasks_core-1.3.2-py3-none-any.whl.metadata (7.8 kB)\\nCollecting anndata<0.11.0,>=0.8.0 (from fractal-tasks-core==1.3.2)\\n  Downloading anndata-0.10.9-py3-none-any.whl.metadata (6.9 kB)\\nCollecting dask>=2023.1.0 (from fractal-tasks-core==1.3.2)\\n  Downloading dask-2024.10.0-py3-none-any.whl.metadata (3.7 kB)\\nCollecting docstring-parser<0.16,>=0.15 (from fractal-tasks-core==1.3.2)\\n  Downloading docstring_parser-0.15-py3-none-any.whl.metadata (2.4 kB)\\nCollecting filelock==3.13.* (from fractal-tasks-core==1.3.2)\\n  Downloading filelock-3.13.4-py3-none-any.whl.metadata (2.8 kB)\\nCollecting fsspec!=2023.9.0 (from fractal-tasks-core==1.3.2)\\n  Downloading fsspec-2024.10.0-py3-none-any.whl.metadata (11 kB)\\nCollecting lxml<5.0.0,>=4.9.1 (from fractal-tasks-core==1.3.2)\\n  Downloading lxml-4.9.4-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (3.7 kB)\\nCollecting numpy<=2.1.0 (from fractal-tasks-core==1.3.2)\\n  Downloading numpy-2.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)\\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.9/60.9 kB 3.1 MB/s eta 0:00:00\\nCollecting pandas>=1.2.0 (from fractal-tasks-core==1.3.2)\\n  Downloading pandas-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)\\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.9/89.9 kB 9.3 MB/s eta 0:00:00\\nCollecting pydantic<=2.8.2,>2 (from fractal-tasks-core==1.3.2)\\n  Downloading pydantic-2.8.2-py3-none-any.whl.metadata (125 kB)\\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.2/125.2 kB 21.1 MB/s eta 0:00:00\\nCollecting zarr<3,>=2.13.6 (from fractal-tasks-core==1.3.2)\\n  Downloading zarr-2.18.3-py3-none-any.whl.metadata (5.7 kB)\\nCollecting array-api-compat!=1.5,>1.4 (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\\n  Downloading array_api_compat-1.9.1-py3-none-any.whl.metadata (1.6 kB)\\nCollecting exceptiongroup (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\\n  Downloading exceptiongroup-1.2.2-py3-none-any.whl.metadata (6.6 kB)\\nCollecting h5py>=3.1 (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\\n  Downloading h5py-3.12.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB)\\nCollecting natsort (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\\n  Downloading natsort-8.4.0-py3-none-any.whl.metadata (21 kB)\\nCollecting packaging>=20.0 (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\\n  Downloading packaging-24.2-py3-none-any.whl.metadata (3.2 kB)\\nCollecting scipy>1.8 (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\\n  Downloading scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)\\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.8/60.8 kB 15.4 MB/s eta 0:00:00\\nCollecting click>=8.1 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\\n  Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB)\\nCollecting cloudpickle>=3.0.0 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\\n  Downloading cloudpickle-3.1.0-py3-none-any.whl.metadata (7.0 kB)\\nCollecting partd>=1.4.0 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\\n  Downloading partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)\\nCollecting pyyaml>=5.3.1 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\\n  Downloading PyYAML-6.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)\\nCollecting toolz>=0.10.0 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\\n  Downloading toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB)\\nCollecting importlib-metadata>=4.13.0 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\\n  Downloading importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)\\nCollecting python-dateutil>=2.8.2 (from pandas>=1.2.0->fractal-tasks-core==1.3.2)\\n  Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)\\nCollecting pytz>=2020.1 (from pandas>=1.2.0->fractal-tasks-core==1.3.2)\\n  Downloading pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)\\nCollecting tzdata>=2022.7 (from pandas>=1.2.0->fractal-tasks-core==1.3.2)\\n  Downloading tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)\\nCollecting annotated-types>=0.4.0 (from pydantic<=2.8.2,>2->fractal-tasks-core==1.3.2)\\n  Downloading annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)\\nCollecting pydantic-core==2.20.1 (from pydantic<=2.8.2,>2->fractal-tasks-core==1.3.2)\\n  Downloading pydantic_core-2.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)\\nCollecting typing-extensions>=4.6.1 (from pydantic<=2.8.2,>2->fractal-tasks-core==1.3.2)\\n  Downloading typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)\\nCollecting asciitree (from zarr<3,>=2.13.6->fractal-tasks-core==1.3.2)\\n  Downloading asciitree-0.3.3.tar.gz (4.0 kB)\\n  Installing build dependencies: started\\n  Installing build dependencies: finished with status 'done'\\n  Getting requirements to build wheel: started\\n  Getting requirements to build wheel: finished with status 'done'\\n  Preparing metadata (pyproject.toml): started\\n  Preparing metadata (pyproject.toml): finished with status 'done'\\nCollecting numcodecs>=0.10.0 (from zarr<3,>=2.13.6->fractal-tasks-core==1.3.2)\\n  Downloading numcodecs-0.13.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)\\nCollecting fasteners (from zarr<3,>=2.13.6->fractal-tasks-core==1.3.2)\\n  Downloading fasteners-0.19-py3-none-any.whl.metadata (4.9 kB)\\nCollecting zipp>=3.20 (from importlib-metadata>=4.13.0->dask>=2023.1.0->fractal-tasks-core==1.3.2)\\n  Downloading zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)\\nCollecting locket (from partd>=1.4.0->dask>=2023.1.0->fractal-tasks-core==1.3.2)\\n  Downloading locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)\\nCollecting six>=1.5 (from python-dateutil>=2.8.2->pandas>=1.2.0->fractal-tasks-core==1.3.2)\\n  Downloading six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)\\nDownloading fractal_tasks_core-1.3.2-py3-none-any.whl (152 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 152.9/152.9 kB 9.2 MB/s eta 0:00:00\\nDownloading filelock-3.13.4-py3-none-any.whl (11 kB)\\nDownloading anndata-0.10.9-py3-none-any.whl (128 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 129.0/129.0 kB 8.8 MB/s eta 0:00:00\\nDownloading dask-2024.10.0-py3-none-any.whl (1.3 MB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 8.9 MB/s eta 0:00:00\\nDownloading docstring_parser-0.15-py3-none-any.whl (36 kB)\\nDownloading fsspec-2024.10.0-py3-none-any.whl (179 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 179.6/179.6 kB 19.7 MB/s eta 0:00:00\\nDownloading lxml-4.9.4-cp310-cp310-manylinux_2_28_x86_64.whl (7.9 MB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.9/7.9 MB 17.8 MB/s eta 0:00:00\\nDownloading numpy-2.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.3 MB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.3/16.3 MB 23.3 MB/s eta 0:00:00\\nDownloading pandas-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.1/13.1 MB 19.8 MB/s eta 0:00:00\\nDownloading pydantic-2.8.2-py3-none-any.whl (423 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 423.9/423.9 kB 29.5 MB/s eta 0:00:00\\nDownloading pydantic_core-2.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 26.1 MB/s eta 0:00:00\\nDownloading zarr-2.18.3-py3-none-any.whl (210 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 210.7/210.7 kB 25.1 MB/s eta 0:00:00\\nDownloading annotated_types-0.7.0-py3-none-any.whl (13 kB)\\nDownloading array_api_compat-1.9.1-py3-none-any.whl (50 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 50.1/50.1 kB 98.2 MB/s eta 0:00:00\\nDownloading click-8.1.7-py3-none-any.whl (97 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 97.9/97.9 kB 157.1 MB/s eta 0:00:00\\nDownloading cloudpickle-3.1.0-py3-none-any.whl (22 kB)\\nDownloading h5py-3.12.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.3 MB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.3/5.3 MB 26.7 MB/s eta 0:00:00\\nDownloading importlib_metadata-8.5.0-py3-none-any.whl (26 kB)\\nDownloading numcodecs-0.13.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.6 MB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.6/8.6 MB 19.1 MB/s eta 0:00:00\\nDownloading packaging-24.2-py3-none-any.whl (65 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.5/65.5 kB 140.3 MB/s eta 0:00:00\\nDownloading partd-1.4.2-py3-none-any.whl (18 kB)\\nDownloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 229.9/229.9 kB 31.4 MB/s eta 0:00:00\\nDownloading pytz-2024.2-py2.py3-none-any.whl (508 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 508.0/508.0 kB 29.8 MB/s eta 0:00:00\\nDownloading PyYAML-6.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (751 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 751.2/751.2 kB 27.5 MB/s eta 0:00:00\\nDownloading scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (41.2 MB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.2/41.2 MB 26.3 MB/s eta 0:00:00\\nDownloading toolz-1.0.0-py3-none-any.whl (56 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.4/56.4 kB 147.9 MB/s eta 0:00:00\\nDownloading typing_extensions-4.12.2-py3-none-any.whl (37 kB)\\nDownloading tzdata-2024.2-py2.py3-none-any.whl (346 kB)\\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 346.6/346.6 kB 25.0 MB/s eta 0:00:00\\nDownloading exceptiongroup-1.2.2-py3-none-any.whl (16 kB)\\nDownloading fasteners-0.19-py3-none-any.whl (18 kB)\\nDownloading natsort-8.4.0-py3-none-any.whl (38 kB)\\nDownloading six-1.16.0-py2.py3-none-any.whl (11 kB)\\nDownloading zipp-3.20.2-py3-none-any.whl (9.2 kB)\\nDownloading locket-1.0.0-py2.py3-none-any.whl (4.4 kB)\\nBuilding wheels for collected packages: asciitree\\n  Building wheel for asciitree (pyproject.toml): started\\n  Building wheel for asciitree (pyproject.toml): finished with status 'done'\\n  Created wheel for asciitree: filename=asciitree-0.3.3-py3-none-any.whl size=5033 sha256=6ddfcdb87fab21b8ac1f35deb51b44100f57089fd71d69faff3a4b7dfbfdaf1f\\n  Stored in directory: /tmp/pip-ephem-wheel-cache-fekq12rg/wheels/7f/4e/be/1171b40f43b918087657ec57cf3b81fa1a2e027d8755baa184\\nSuccessfully built asciitree\\nInstalling collected packages: pytz, asciitree, zipp, tzdata, typing-extensions, toolz, six, pyyaml, packaging, numpy, natsort, lxml, locket, fsspec, filelock, fasteners, exceptiongroup, docstring-parser, cloudpickle, click, array-api-compat, annotated-types, scipy, python-dateutil, pydantic-core, partd, numcodecs, importlib-metadata, h5py, zarr, pydantic, pandas, dask, anndata, fractal-tasks-core\\nSuccessfully installed anndata-0.10.9 annotated-types-0.7.0 array-api-compat-1.9.1 asciitree-0.3.3 click-8.1.7 cloudpickle-3.1.0 dask-2024.10.0 docstring-parser-0.15 exceptiongroup-1.2.2 fasteners-0.19 filelock-3.13.4 fractal-tasks-core-1.3.2 fsspec-2024.10.0 h5py-3.12.1 importlib-metadata-8.5.0 locket-1.0.0 lxml-4.9.4 natsort-8.4.0 numcodecs-0.13.1 numpy-2.1.0 packaging-24.2 pandas-2.2.3 partd-1.4.2 pydantic-2.8.2 pydantic-core-2.20.1 python-dateutil-2.9.0.post0 pytz-2024.2 pyyaml-6.0.2 scipy-1.14.1 six-1.16.0 toolz-1.0.0 typing-extensions-4.12.2 tzdata-2024.2 zarr-2.18.3 zipp-3.20.2\\n[collect-task, 2024-11-08T09:55:17Z] END   install fractal-tasks-core==1.3.2\\n\\n[collect-task, 2024-11-08T09:55:17Z] SKIP installing pinned versions  (empty list)\\n[collect-task, 2024-11-08T09:55:17Z] All good up to here.\\n[collect-task, 2024-11-08T09:55:17Z] Elapsed: 20 seconds\\n[collect-task, 2024-11-08T09:55:17Z] Exit.\\n\\n\"\n2024-11-08 10:55:17,739 - task_collection_local - DEBUG - stderr='\\n[notice] A new release of pip is available: 24.0 -> 24.3.1\\n[notice] To update, run: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/bin/python -m pip install --upgrade pip\\n'\n2024-11-08 10:55:17,739 - task_collection_local - DEBUG - END   subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_3_pip_install'\n2024-11-08 10:55:17,739 - task_collection_local - DEBUG - Standard output of 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_3_pip_install':\n[collect-task, 2024-11-08T09:54:57Z] START install fractal-tasks-core==1.3.2\nCollecting fractal-tasks-core==1.3.2\n  Downloading fractal_tasks_core-1.3.2-py3-none-any.whl.metadata (7.8 kB)\nCollecting anndata<0.11.0,>=0.8.0 (from fractal-tasks-core==1.3.2)\n  Downloading anndata-0.10.9-py3-none-any.whl.metadata (6.9 kB)\nCollecting dask>=2023.1.0 (from fractal-tasks-core==1.3.2)\n  Downloading dask-2024.10.0-py3-none-any.whl.metadata (3.7 kB)\nCollecting docstring-parser<0.16,>=0.15 (from fractal-tasks-core==1.3.2)\n  Downloading docstring_parser-0.15-py3-none-any.whl.metadata (2.4 kB)\nCollecting filelock==3.13.* (from fractal-tasks-core==1.3.2)\n  Downloading filelock-3.13.4-py3-none-any.whl.metadata (2.8 kB)\nCollecting fsspec!=2023.9.0 (from fractal-tasks-core==1.3.2)\n  Downloading fsspec-2024.10.0-py3-none-any.whl.metadata (11 kB)\nCollecting lxml<5.0.0,>=4.9.1 (from fractal-tasks-core==1.3.2)\n  Downloading lxml-4.9.4-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (3.7 kB)\nCollecting numpy<=2.1.0 (from fractal-tasks-core==1.3.2)\n  Downloading numpy-2.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.9/60.9 kB 3.1 MB/s eta 0:00:00\nCollecting pandas>=1.2.0 (from fractal-tasks-core==1.3.2)\n  Downloading pandas-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.9/89.9 kB 9.3 MB/s eta 0:00:00\nCollecting pydantic<=2.8.2,>2 (from fractal-tasks-core==1.3.2)\n  Downloading pydantic-2.8.2-py3-none-any.whl.metadata (125 kB)\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.2/125.2 kB 21.1 MB/s eta 0:00:00\nCollecting zarr<3,>=2.13.6 (from fractal-tasks-core==1.3.2)\n  Downloading zarr-2.18.3-py3-none-any.whl.metadata (5.7 kB)\nCollecting array-api-compat!=1.5,>1.4 (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\n  Downloading array_api_compat-1.9.1-py3-none-any.whl.metadata (1.6 kB)\nCollecting exceptiongroup (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\n  Downloading exceptiongroup-1.2.2-py3-none-any.whl.metadata (6.6 kB)\nCollecting h5py>=3.1 (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\n  Downloading h5py-3.12.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB)\nCollecting natsort (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\n  Downloading natsort-8.4.0-py3-none-any.whl.metadata (21 kB)\nCollecting packaging>=20.0 (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\n  Downloading packaging-24.2-py3-none-any.whl.metadata (3.2 kB)\nCollecting scipy>1.8 (from anndata<0.11.0,>=0.8.0->fractal-tasks-core==1.3.2)\n  Downloading scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)\n     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.8/60.8 kB 15.4 MB/s eta 0:00:00\nCollecting click>=8.1 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\n  Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB)\nCollecting cloudpickle>=3.0.0 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\n  Downloading cloudpickle-3.1.0-py3-none-any.whl.metadata (7.0 kB)\nCollecting partd>=1.4.0 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\n  Downloading partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)\nCollecting pyyaml>=5.3.1 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\n  Downloading PyYAML-6.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)\nCollecting toolz>=0.10.0 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\n  Downloading toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB)\nCollecting importlib-metadata>=4.13.0 (from dask>=2023.1.0->fractal-tasks-core==1.3.2)\n  Downloading importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)\nCollecting python-dateutil>=2.8.2 (from pandas>=1.2.0->fractal-tasks-core==1.3.2)\n  Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)\nCollecting pytz>=2020.1 (from pandas>=1.2.0->fractal-tasks-core==1.3.2)\n  Downloading pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)\nCollecting tzdata>=2022.7 (from pandas>=1.2.0->fractal-tasks-core==1.3.2)\n  Downloading tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)\nCollecting annotated-types>=0.4.0 (from pydantic<=2.8.2,>2->fractal-tasks-core==1.3.2)\n  Downloading annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)\nCollecting pydantic-core==2.20.1 (from pydantic<=2.8.2,>2->fractal-tasks-core==1.3.2)\n  Downloading pydantic_core-2.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)\nCollecting typing-extensions>=4.6.1 (from pydantic<=2.8.2,>2->fractal-tasks-core==1.3.2)\n  Downloading typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)\nCollecting asciitree (from zarr<3,>=2.13.6->fractal-tasks-core==1.3.2)\n  Downloading asciitree-0.3.3.tar.gz (4.0 kB)\n  Installing build dependencies: started\n  Installing build dependencies: finished with status 'done'\n  Getting requirements to build wheel: started\n  Getting requirements to build wheel: finished with status 'done'\n  Preparing metadata (pyproject.toml): started\n  Preparing metadata (pyproject.toml): finished with status 'done'\nCollecting numcodecs>=0.10.0 (from zarr<3,>=2.13.6->fractal-tasks-core==1.3.2)\n  Downloading numcodecs-0.13.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)\nCollecting fasteners (from zarr<3,>=2.13.6->fractal-tasks-core==1.3.2)\n  Downloading fasteners-0.19-py3-none-any.whl.metadata (4.9 kB)\nCollecting zipp>=3.20 (from importlib-metadata>=4.13.0->dask>=2023.1.0->fractal-tasks-core==1.3.2)\n  Downloading zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)\nCollecting locket (from partd>=1.4.0->dask>=2023.1.0->fractal-tasks-core==1.3.2)\n  Downloading locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)\nCollecting six>=1.5 (from python-dateutil>=2.8.2->pandas>=1.2.0->fractal-tasks-core==1.3.2)\n  Downloading six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)\nDownloading fractal_tasks_core-1.3.2-py3-none-any.whl (152 kB)\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 152.9/152.9 kB 9.2 MB/s eta 0:00:00\nDownloading 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MB)\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.2/41.2 MB 26.3 MB/s eta 0:00:00\nDownloading toolz-1.0.0-py3-none-any.whl (56 kB)\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.4/56.4 kB 147.9 MB/s eta 0:00:00\nDownloading typing_extensions-4.12.2-py3-none-any.whl (37 kB)\nDownloading tzdata-2024.2-py2.py3-none-any.whl (346 kB)\n   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 346.6/346.6 kB 25.0 MB/s eta 0:00:00\nDownloading exceptiongroup-1.2.2-py3-none-any.whl (16 kB)\nDownloading fasteners-0.19-py3-none-any.whl (18 kB)\nDownloading natsort-8.4.0-py3-none-any.whl (38 kB)\nDownloading six-1.16.0-py2.py3-none-any.whl (11 kB)\nDownloading zipp-3.20.2-py3-none-any.whl (9.2 kB)\nDownloading locket-1.0.0-py2.py3-none-any.whl (4.4 kB)\nBuilding wheels for collected packages: asciitree\n  Building wheel for asciitree (pyproject.toml): started\n  Building wheel for asciitree (pyproject.toml): finished with status 'done'\n  Created wheel for asciitree: filename=asciitree-0.3.3-py3-none-any.whl size=5033 sha256=6ddfcdb87fab21b8ac1f35deb51b44100f57089fd71d69faff3a4b7dfbfdaf1f\n  Stored in directory: /tmp/pip-ephem-wheel-cache-fekq12rg/wheels/7f/4e/be/1171b40f43b918087657ec57cf3b81fa1a2e027d8755baa184\nSuccessfully built asciitree\nInstalling collected packages: pytz, asciitree, zipp, tzdata, typing-extensions, toolz, six, pyyaml, packaging, numpy, natsort, lxml, locket, fsspec, filelock, fasteners, exceptiongroup, docstring-parser, cloudpickle, click, array-api-compat, annotated-types, scipy, python-dateutil, pydantic-core, partd, numcodecs, importlib-metadata, h5py, zarr, pydantic, pandas, dask, anndata, fractal-tasks-core\nSuccessfully installed anndata-0.10.9 annotated-types-0.7.0 array-api-compat-1.9.1 asciitree-0.3.3 click-8.1.7 cloudpickle-3.1.0 dask-2024.10.0 docstring-parser-0.15 exceptiongroup-1.2.2 fasteners-0.19 filelock-3.13.4 fractal-tasks-core-1.3.2 fsspec-2024.10.0 h5py-3.12.1 importlib-metadata-8.5.0 locket-1.0.0 lxml-4.9.4 natsort-8.4.0 numcodecs-0.13.1 numpy-2.1.0 packaging-24.2 pandas-2.2.3 partd-1.4.2 pydantic-2.8.2 pydantic-core-2.20.1 python-dateutil-2.9.0.post0 pytz-2024.2 pyyaml-6.0.2 scipy-1.14.1 six-1.16.0 toolz-1.0.0 typing-extensions-4.12.2 tzdata-2024.2 zarr-2.18.3 zipp-3.20.2\n[collect-task, 2024-11-08T09:55:17Z] END   install fractal-tasks-core==1.3.2\n\n[collect-task, 2024-11-08T09:55:17Z] SKIP installing pinned versions  (empty list)\n[collect-task, 2024-11-08T09:55:17Z] All good up to here.\n[collect-task, 2024-11-08T09:55:17Z] Elapsed: 20 seconds\n[collect-task, 2024-11-08T09:55:17Z] Exit.\n\n\n2024-11-08 10:55:17,739 - task_collection_local - DEBUG - _customize_and_run_template _3_pip_install.sh - END\n2024-11-08 10:55:17,752 - task_collection_local - DEBUG - _customize_and_run_template _4_pip_freeze.sh - START\n2024-11-08 10:55:17,753 - task_collection_local - DEBUG - Now run 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_4_pip_freeze' \n2024-11-08 10:55:17,753 - task_collection_local - DEBUG - START subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_4_pip_freeze'\n2024-11-08 10:55:17,979 - task_collection_local - DEBUG - returncode=0\n2024-11-08 10:55:17,979 - task_collection_local - DEBUG - stdout='anndata==0.10.9\\nannotated-types==0.7.0\\narray_api_compat==1.9.1\\nasciitree==0.3.3\\nclick==8.1.7\\ncloudpickle==3.1.0\\ndask==2024.10.0\\ndocstring-parser==0.15\\nexceptiongroup==1.2.2\\nfasteners==0.19\\nfilelock==3.13.4\\nfractal-tasks-core==1.3.2\\nfsspec==2024.10.0\\nh5py==3.12.1\\nimportlib_metadata==8.5.0\\nlocket==1.0.0\\nlxml==4.9.4\\nnatsort==8.4.0\\nnumcodecs==0.13.1\\nnumpy==2.1.0\\npackaging==24.2\\npandas==2.2.3\\npartd==1.4.2\\npip==24.0\\npydantic==2.8.2\\npydantic_core==2.20.1\\npython-dateutil==2.9.0.post0\\npytz==2024.2\\nPyYAML==6.0.2\\nscipy==1.14.1\\nsetuptools==59.6.0\\nsix==1.16.0\\ntoolz==1.0.0\\ntyping_extensions==4.12.2\\ntzdata==2024.2\\nzarr==2.18.3\\nzipp==3.20.2\\n'\n2024-11-08 10:55:17,979 - task_collection_local - DEBUG - stderr=''\n2024-11-08 10:55:17,979 - task_collection_local - DEBUG - END   subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_4_pip_freeze'\n2024-11-08 10:55:17,979 - task_collection_local - DEBUG - Standard output of 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_4_pip_freeze':\nanndata==0.10.9\nannotated-types==0.7.0\narray_api_compat==1.9.1\nasciitree==0.3.3\nclick==8.1.7\ncloudpickle==3.1.0\ndask==2024.10.0\ndocstring-parser==0.15\nexceptiongroup==1.2.2\nfasteners==0.19\nfilelock==3.13.4\nfractal-tasks-core==1.3.2\nfsspec==2024.10.0\nh5py==3.12.1\nimportlib_metadata==8.5.0\nlocket==1.0.0\nlxml==4.9.4\nnatsort==8.4.0\nnumcodecs==0.13.1\nnumpy==2.1.0\npackaging==24.2\npandas==2.2.3\npartd==1.4.2\npip==24.0\npydantic==2.8.2\npydantic_core==2.20.1\npython-dateutil==2.9.0.post0\npytz==2024.2\nPyYAML==6.0.2\nscipy==1.14.1\nsetuptools==59.6.0\nsix==1.16.0\ntoolz==1.0.0\ntyping_extensions==4.12.2\ntzdata==2024.2\nzarr==2.18.3\nzipp==3.20.2\n\n2024-11-08 10:55:17,980 - task_collection_local - DEBUG - _customize_and_run_template _4_pip_freeze.sh - END\n2024-11-08 10:55:17,993 - task_collection_local - DEBUG - _customize_and_run_template _5_pip_show.sh - START\n2024-11-08 10:55:17,994 - task_collection_local - DEBUG - Now run 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_5_pip_show' \n2024-11-08 10:55:17,994 - task_collection_local - DEBUG - START subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_5_pip_show'\n2024-11-08 10:55:20,150 - task_collection_local - DEBUG - returncode=0\n2024-11-08 10:55:20,150 - task_collection_local - DEBUG - stdout='[collect-task, 2024-11-08T09:55:17Z] Python interpreter: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/bin/python\\n\\n[collect-task, 2024-11-08T09:55:17Z] START pip show\\nName: fractal-tasks-core\\nVersion: 1.3.2\\nSummary: Core bioimage-analysis library and tasks of the Fractal analytics platform\\nHome-page: https://github.com/fractal-analytics-platform/fractal-tasks-core\\nAuthor: Joel Lüthi \\nAuthor-email: joel.luethi@fmi.ch\\nLicense: BSD-3-Clause\\nLocation: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages\\nRequires: anndata, dask, docstring-parser, filelock, fsspec, lxml, numpy, pandas, pydantic, zarr\\nRequired-by: \\n[collect-task, 2024-11-08T09:55:18Z] END   pip show\\n\\n[collect-task, 2024-11-08T09:55:18Z] Package name: fractal-tasks-core\\n\\n[collect-task, 2024-11-08T09:55:19Z] Package version: 1.3.2\\n\\n[collect-task, 2024-11-08T09:55:19Z] Package parent folder: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages\\n\\n[collect-task, 2024-11-08T09:55:20Z] Manifest relative path: fractal_tasks_core/__FRACTAL_MANIFEST__.json\\n\\n[collect-task, 2024-11-08T09:55:20Z] Manifest absolute path: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages/fractal_tasks_core/__FRACTAL_MANIFEST__.json\\n\\n[collect-task, 2024-11-08T09:55:20Z] OK: manifest path exists\\n\\n[collect-task, 2024-11-08T09:55:20Z] All good up to here.\\n[collect-task, 2024-11-08T09:55:20Z] Elapsed: 3 seconds\\n[collect-task, 2024-11-08T09:55:20Z] Exit.\\n\\n'\n2024-11-08 10:55:20,150 - task_collection_local - DEBUG - stderr=''\n2024-11-08 10:55:20,150 - task_collection_local - DEBUG - END   subprocess call to 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_5_pip_show'\n2024-11-08 10:55:20,150 - task_collection_local - DEBUG - Standard output of 'bash /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/scripts/1731059692_collect_5_pip_show':\n[collect-task, 2024-11-08T09:55:17Z] Python interpreter: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/bin/python\n\n[collect-task, 2024-11-08T09:55:17Z] START pip show\nName: fractal-tasks-core\nVersion: 1.3.2\nSummary: Core bioimage-analysis library and tasks of the Fractal analytics platform\nHome-page: https://github.com/fractal-analytics-platform/fractal-tasks-core\nAuthor: Joel Lüthi \nAuthor-email: joel.luethi@fmi.ch\nLicense: BSD-3-Clause\nLocation: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages\nRequires: anndata, dask, docstring-parser, filelock, fsspec, lxml, numpy, pandas, pydantic, zarr\nRequired-by: \n[collect-task, 2024-11-08T09:55:18Z] END   pip show\n\n[collect-task, 2024-11-08T09:55:18Z] Package name: fractal-tasks-core\n\n[collect-task, 2024-11-08T09:55:19Z] Package version: 1.3.2\n\n[collect-task, 2024-11-08T09:55:19Z] Package parent folder: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages\n\n[collect-task, 2024-11-08T09:55:20Z] Manifest relative path: fractal_tasks_core/__FRACTAL_MANIFEST__.json\n\n[collect-task, 2024-11-08T09:55:20Z] Manifest absolute path: /home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages/fractal_tasks_core/__FRACTAL_MANIFEST__.json\n\n[collect-task, 2024-11-08T09:55:20Z] OK: manifest path exists\n\n[collect-task, 2024-11-08T09:55:20Z] All good up to here.\n[collect-task, 2024-11-08T09:55:20Z] Elapsed: 3 seconds\n[collect-task, 2024-11-08T09:55:20Z] Exit.\n\n\n2024-11-08 10:55:20,150 - task_collection_local - DEBUG - _customize_and_run_template _5_pip_show.sh - END\n2024-11-08 10:55:20,164 - task_collection_local - DEBUG - collecting - parsed from pip-show: python_bin=/home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/bin/python\n2024-11-08 10:55:20,164 - task_collection_local - DEBUG - collecting - parsed from pip-show: package_name=fractal-tasks-core\n2024-11-08 10:55:20,164 - task_collection_local - DEBUG - collecting - parsed from pip-show: package_version=1.3.2\n2024-11-08 10:55:20,164 - task_collection_local - DEBUG - collecting - parsed from pip-show: package_root_parent=/home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages\n2024-11-08 10:55:20,164 - task_collection_local - DEBUG - collecting - parsed from pip-show: manifest_path=/home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages/fractal_tasks_core/__FRACTAL_MANIFEST__.json\n2024-11-08 10:55:20,164 - task_collection_local - INFO - collecting - now loading manifest_path='/home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages/fractal_tasks_core/__FRACTAL_MANIFEST__.json'\n2024-11-08 10:55:20,164 - task_collection_local - INFO - collecting - loaded manifest_path='/home/xonya/code/fractal-server/Tasks/1/fractal-tasks-core/1.3.2/venv/lib/python3.10/site-packages/fractal_tasks_core/__FRACTAL_MANIFEST__.json'\n2024-11-08 10:55:20,164 - task_collection_local - INFO - collecting - now validating manifest content\n2024-11-08 10:55:20,166 - task_collection_local - INFO - collecting - validated manifest content\n2024-11-08 10:55:20,172 - task_collection_local - INFO - collecting - _prepare_tasks_metadata - start\n2024-11-08 10:55:20,175 - task_collection_local - INFO - collecting - _prepare_tasks_metadata - end\n2024-11-08 10:55:20,185 - task_collection_local - INFO - collecting - create_db_tasks_and_update_task_group - start\n2024-11-08 10:55:20,207 - task_collection_local - INFO - collecting - create_db_tasks_and_update_task_group - end\n2024-11-08 10:55:20,207 - task_collection_local - INFO - collecting - add pip freeze stdout to TaskGroupV2 - start\n2024-11-08 10:55:20,215 - task_collection_local - INFO - collecting - add pip freeze stdout to TaskGroupV2 - end\n2024-11-08 10:55:20,215 - task_collection_local - DEBUG - collecting - END\n2024-11-08 10:55:20,215 - task_collection_local - DEBUG - finalising - START\n2024-11-08 10:55:20,215 - task_collection_local - DEBUG - task_group_activity_id=1 - set task_group_activity.status to {new_status}\n"
   }
]
tcompa commented 5 days ago

Note: this must be there both for OK and failed operations