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fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
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[auto] Update dependencies in `poetry.lock` #648

Closed tcompa closed 5 months ago

tcompa commented 5 months ago

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 7 updates, 0 removals

  • Updating pydantic (1.10.13 -> 1.10.14)
  • Updating toolz (0.12.0 -> 0.12.1)
  • Updating pytz (2023.3.post1 -> 2023.4)
  • Updating scipy (1.11.4 -> 1.12.0)
  • Updating dask (2024.1.0 -> 2024.1.1)
  • Updating array-api-compat (1.4 -> 1.4.1)
  • Updating anndata (0.10.4 -> 0.10.5.post1)

Writing lock file

Outdated dependencies before PR:

anndata                        0.10.4       0.10.5.post1 Annotated data.
array-api-compat               1.4          1.4.1        A wrapper around Nu...
dask                           2024.1.0     2024.1.1     Parallel PyData wit...
docutils                   (!) 0.17.1       0.20.1       Docutils -- Python ...
executing                  (!) 0.10.0       2.0.1        Get the currently e...
ipython                    (!) 8.18.1       8.21.0       IPython: Productive...
jsonschema                 (!) 4.21.0       4.21.1       An implementation o...
jupyter-server-terminals   (!) 0.5.1        0.5.2        A Jupyter Server Ex...
jupyterlab                 (!) 4.0.10       4.0.12       JupyterLab computat...
lxml                           4.9.4        5.1.0        Powerful and Python...
markupsafe                 (!) 2.1.3        2.1.4        Safely add untruste...
napari-skimage-regionprops (!) 0.8.2        0.10.1       A regionprops table...
nest-asyncio               (!) 1.5.9        1.6.0        Patch asyncio to al...
notebook                   (!) 7.0.6        7.0.7        Jupyter Notebook - ...
npe2                       (!) 0.7.3        0.7.4        napari plugin engin...
numpydoc                   (!) 1.5.0        1.6.0        Sphinx extension to...
nvidia-cublas-cu11         (!) 11.10.3.66   11.11.3.6    CUBLAS native runti...
nvidia-cuda-cupti-cu11     (!) 11.7.101     11.8.87      CUDA profiling tool...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99      11.8.89      NVRTC native runtim...
nvidia-cuda-runtime-cu11   (!) 11.7.99      11.8.89      CUDA Runtime native...
nvidia-cudnn-cu11          (!) 8.5.0.96     8.9.6.50     cuDNN runtime libra...
nvidia-curand-cu11         (!) 10.2.10.91   10.3.0.86    CURAND native runti...
nvidia-cusolver-cu11       (!) 11.4.0.1     11.4.1.48    CUDA solver native ...
nvidia-cusparse-cu11       (!) 11.7.4.91    11.7.5.86    CUSPARSE native run...
nvidia-nccl-cu11           (!) 2.14.3       2.19.3       NVIDIA Collective C...
nvidia-nvtx-cu11           (!) 11.7.91      11.8.86      NVIDIA Tools Extension
overrides                  (!) 7.4.0        7.7.0        A decorator to auto...
pandas                         1.5.3        2.2.0        Powerful data struc...
platformdirs               (!) 4.1.0        4.2.0        A small Python pack...
psutil                     (!) 5.9.7        5.9.8        Cross-platform lib ...
pydantic                       1.10.13      2.6.0        Data validation and...
pytz                           2023.3.post1 2023.4       World timezone defi...
referencing                (!) 0.32.1       0.33.0       JSON Referencing + ...
scipy                          1.11.4       1.12.0       Fundamental algorit...
sphinx                     (!) 4.5.0        7.2.6        Python documentatio...
stack-data                 (!) 0.5.1        0.6.3        Extract data from p...
tifffile                   (!) 2023.12.9    2024.1.30    Read and write TIFF...
toolz                          0.12.0       0.12.1       List processing too...
torch                      (!) 2.0.0        2.2.0        Tensors and Dynamic...
triton                     (!) 2.0.0        2.2.0        A language and comp...
urllib3                    (!) 2.1.0        2.2.0        HTTP library with t...
vispy                      (!) 0.12.2       0.14.1       Interactive visuali...

Outdated dependencies after PR:

docutils                   (!) 0.17.1     0.20.1    Docutils -- Python Docum...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
ipython                    (!) 8.18.1     8.21.0    IPython: Productive Inte...
lxml                           4.9.4      5.1.0     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
numpydoc                   (!) 1.5.0      1.6.0     Sphinx extension to supp...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   8.9.6.50  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.19.3    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.0     Powerful data structures...
pydantic                       1.10.14    2.6.0     Data validation and sett...
sphinx                     (!) 4.5.0      7.2.6     Python documentation gen...
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
torch                      (!) 2.0.0      2.2.0     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.2.0     A language and compiler ...
vispy                      (!) 0.12.2     0.14.1    Interactive visualizatio...

Note: there may be dependencies in the table above which were not updated as part of this PR. The reason is they require manual updating due to the way they are pinned.

github-actions[bot] commented 5 months ago

Coverage report

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