[auto] Update dependencies in `poetry.lock`

fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform

BSD 3-Clause "New" or "Revised" License

11 stars 5 forks source link

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 1 update, 0 removals

  • Updating python-dateutil (2.8.2 -> 2.9.0.post0)

Writing lock file

Outdated dependencies before PR:

build                      (!) 1.0.3      1.1.1        A simple, correct Pyt...
cellpose                   (!) 2.2.3      3.0.6        anatomical segmentati...
executing                  (!) 0.10.0     2.0.1        Get the currently exe...
ipython                    (!) 8.18.1     8.22.2       IPython: Productive I...
json5                      (!) 0.9.17     0.9.20       A Python implementati...
jupyter-server             (!) 2.12.5     2.13.0       The backend—i.e. core...
jupyterlab                 (!) 4.1.2      4.1.3        JupyterLab computatio...
lxml                           4.9.4      5.1.0        Powerful and Pythonic...
napari                     (!) 0.4.19     0.4.19.post1 n-dimensional array v...
napari-skimage-regionprops (!) 0.8.2      0.10.1       A regionprops table w...
nbconvert                  (!) 7.16.1     7.16.2       Converting Jupyter No...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6    CUBLAS native runtime...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87      CUDA profiling tools ...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89      NVRTC native runtime ...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89      CUDA Runtime native L...
nvidia-cudnn-cu11          (!) 8.5.0.96   8.9.6.50     cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86    CURAND native runtime...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48    CUDA solver native ru...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86    CUSPARSE native runti...
nvidia-nccl-cu11           (!) 2.14.3     2.19.3       NVIDIA Collective Com...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86      NVIDIA Tools Extension
pandas                         1.5.3      2.2.1        Powerful data structu...
pooch                      (!) 1.8.0      1.8.1        "Pooch manages your P...
pydantic                       1.10.14    2.6.3        Data validation and s...
python-dateutil                2.8.2      2.9.0.post0  Extensions to the sta...
rich                       (!) 13.7.0     13.7.1       Render rich text, tab...
stack-data                 (!) 0.5.1      0.6.3        Extract data from pyt...
torch                      (!) 2.0.0      2.2.1        Tensors and Dynamic n...
triton                     (!) 2.0.0      2.2.0        A language and compil...

Outdated dependencies after PR:

cellpose                   (!) 2.2.3      3.0.6     anatomical segmentation ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
ipython                    (!) 8.18.1     8.22.2    IPython: Productive Inte...
lxml                           4.9.4      5.1.0     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   8.9.6.50  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.19.3    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.1     Powerful data structures...
pooch                      (!) 1.8.0      1.8.1     "Pooch manages your Pyth...
pydantic                       1.10.14    2.6.3     Data validation and sett...
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
torch                      (!) 2.0.0      2.2.1     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.2.0     A language and compiler ...

Note: there may be dependencies in the table above which were not updated as part of this PR. The reason is they require manual updating due to the way they are pinned.

File	Statements	Missing	Coverage	Coverage (new stmts)
fractal_tasks_core
channels.py	$This PR doesn't change the number of statements in fractal_tasks_core/channels.py, which is 188.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/channels.py, which is 1.$	$This PR doesn't change the coverage rate in fractal_tasks_core/channels.py, which is 99.46% (187/188).$	$This PR does not seem to add statements to fractal_tasks_core/channels.py.$
fractal_tasks_core/cellvoyager
metadata.py	$This PR doesn't change the number of statements in fractal_tasks_core/cellvoyager/metadata.py, which is 99.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/cellvoyager/metadata.py, which is 7.$	$This PR doesn't change the coverage rate in fractal_tasks_core/cellvoyager/metadata.py, which is 92.92% (92/99).$	$This PR does not seem to add statements to fractal_tasks_core/cellvoyager/metadata.py.$
fractal_tasks_core/ngff
specs.py	$This PR doesn't change the number of statements in fractal_tasks_core/ngff/specs.py, which is 122.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/ngff/specs.py, which is 0.$	$This PR doesn't change the coverage rate in fractal_tasks_core/ngff/specs.py, which is 100% (122/122).$	$This PR does not seem to add statements to fractal_tasks_core/ngff/specs.py.$
fractal_tasks_core/roi
v1.py	$This PR doesn't change the number of statements in fractal_tasks_core/roi/v1.py, which is 156.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1.py, which is 1.$	$This PR doesn't change the coverage rate in fractal_tasks_core/roi/v1.py, which is 99.35% (155/156).$	$This PR does not seem to add statements to fractal_tasks_core/roi/v1.py.$
v1_overlaps.py	$This PR doesn't change the number of statements in fractal_tasks_core/roi/v1_overlaps.py, which is 145.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1_overlaps.py, which is 5.$	$This PR doesn't change the coverage rate in fractal_tasks_core/roi/v1_overlaps.py, which is 96.55% (140/145).$	$This PR does not seem to add statements to fractal_tasks_core/roi/v1_overlaps.py.$
fractal_tasks_core/tasks
apply_registration_to_ROI_tables.py	$This PR doesn't change the number of statements in fractal_tasks_core/tasks/apply_registration_to_ROI_tables.py, which is 84.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/apply_registration_to_ROI_tables.py, which is 5.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/apply_registration_to_ROI_tables.py, which is 94.04% (79/84).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/apply_registration_to_ROI_tables.py.$
cellpose_segmentation.py	$This PR doesn't change the number of statements in fractal_tasks_core/tasks/cellpose_segmentation.py, which is 211.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellpose_segmentation.py, which is 24.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/cellpose_segmentation.py, which is 88.62% (187/211).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/cellpose_segmentation.py.$
copy_ome_zarr.py	$This PR doesn't change the number of statements in fractal_tasks_core/tasks/copy_ome_zarr.py, which is 71.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/copy_ome_zarr.py, which is 4.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/copy_ome_zarr.py, which is 94.36% (67/71).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/copy_ome_zarr.py.$
create_ome_zarr.py	$This PR doesn't change the number of statements in fractal_tasks_core/tasks/create_ome_zarr.py, which is 162.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/create_ome_zarr.py, which is 25.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/create_ome_zarr.py, which is 84.56% (137/162).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/create_ome_zarr.py.$
create_ome_zarr_multiplex.py	$This PR doesn't change the number of statements in fractal_tasks_core/tasks/create_ome_zarr_multiplex.py, which is 189.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/create_ome_zarr_multiplex.py, which is 19.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/create_ome_zarr_multiplex.py, which is 89.94% (170/189).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/create_ome_zarr_multiplex.py.$
import_ome_zarr.py	$This PR doesn't change the number of statements in fractal_tasks_core/tasks/import_ome_zarr.py, which is 93.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/import_ome_zarr.py, which is 10.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/import_ome_zarr.py, which is 89.24% (83/93).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/import_ome_zarr.py.$
napari_workflows_wrapper.py	$This PR doesn't change the number of statements in fractal_tasks_core/tasks/napari_workflows_wrapper.py, which is 244.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/napari_workflows_wrapper.py, which is 20.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/napari_workflows_wrapper.py, which is 91.8% (224/244).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/napari_workflows_wrapper.py.$
yokogawa_to_ome_zarr.py	$This PR doesn't change the number of statements in fractal_tasks_core/tasks/yokogawa_to_ome_zarr.py, which is 94.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/yokogawa_to_ome_zarr.py, which is 5.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/yokogawa_to_ome_zarr.py, which is 94.68% (89/94).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/yokogawa_to_ome_zarr.py.$
Project Total

File

Statements

Missing

Coverage

Coverage
(new stmts)

Lines missing

fractal_tasks_core

channels.py

$This PR doesn't change the number of statements in fractal_tasks_core/channels.py, which is 188.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/channels.py, which is 1.$

$This PR doesn't change the coverage rate in fractal_tasks_core/channels.py, which is 99.46% (187/188).$

$This PR does not seem to add statements to fractal_tasks_core/channels.py.$

fractal_tasks_core/cellvoyager

metadata.py

$This PR doesn't change the number of statements in fractal_tasks_core/cellvoyager/metadata.py, which is 99.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/cellvoyager/metadata.py, which is 7.$

$This PR doesn't change the coverage rate in fractal_tasks_core/cellvoyager/metadata.py, which is 92.92% (92/99).$

$This PR does not seem to add statements to fractal_tasks_core/cellvoyager/metadata.py.$

fractal_tasks_core/ngff

specs.py

$This PR doesn't change the number of statements in fractal_tasks_core/ngff/specs.py, which is 122.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/ngff/specs.py, which is 0.$

$This PR doesn't change the coverage rate in fractal_tasks_core/ngff/specs.py, which is 100% (122/122).$

$This PR does not seem to add statements to fractal_tasks_core/ngff/specs.py.$

fractal_tasks_core/roi

v1.py

$This PR doesn't change the number of statements in fractal_tasks_core/roi/v1.py, which is 156.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1.py, which is 1.$

$This PR doesn't change the coverage rate in fractal_tasks_core/roi/v1.py, which is 99.35% (155/156).$

$This PR does not seem to add statements to fractal_tasks_core/roi/v1.py.$

v1_overlaps.py

$This PR doesn't change the number of statements in fractal_tasks_core/roi/v1_overlaps.py, which is 145.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1_overlaps.py, which is 5.$

$This PR doesn't change the coverage rate in fractal_tasks_core/roi/v1_overlaps.py, which is 96.55% (140/145).$

$This PR does not seem to add statements to fractal_tasks_core/roi/v1_overlaps.py.$

fractal_tasks_core/tasks

apply_registration_to_ROI_tables.py

$This PR doesn't change the number of statements in fractal_tasks_core/tasks/apply_registration_to_ROI_tables.py, which is 84.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/apply_registration_to_ROI_tables.py, which is 5.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/apply_registration_to_ROI_tables.py, which is 94.04% (79/84).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/apply_registration_to_ROI_tables.py.$

cellpose_segmentation.py

$This PR doesn't change the number of statements in fractal_tasks_core/tasks/cellpose_segmentation.py, which is 211.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellpose_segmentation.py, which is 24.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/cellpose_segmentation.py, which is 88.62% (187/211).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/cellpose_segmentation.py.$

copy_ome_zarr.py

$This PR doesn't change the number of statements in fractal_tasks_core/tasks/copy_ome_zarr.py, which is 71.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/copy_ome_zarr.py, which is 4.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/copy_ome_zarr.py, which is 94.36% (67/71).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/copy_ome_zarr.py.$

create_ome_zarr.py

$This PR doesn't change the number of statements in fractal_tasks_core/tasks/create_ome_zarr.py, which is 162.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/create_ome_zarr.py, which is 25.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/create_ome_zarr.py, which is 84.56% (137/162).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/create_ome_zarr.py.$

create_ome_zarr_multiplex.py

$This PR doesn't change the number of statements in fractal_tasks_core/tasks/create_ome_zarr_multiplex.py, which is 189.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/create_ome_zarr_multiplex.py, which is 19.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/create_ome_zarr_multiplex.py, which is 89.94% (170/189).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/create_ome_zarr_multiplex.py.$

import_ome_zarr.py

$This PR doesn't change the number of statements in fractal_tasks_core/tasks/import_ome_zarr.py, which is 93.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/import_ome_zarr.py, which is 10.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/import_ome_zarr.py, which is 89.24% (83/93).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/import_ome_zarr.py.$

napari_workflows_wrapper.py

$This PR doesn't change the number of statements in fractal_tasks_core/tasks/napari_workflows_wrapper.py, which is 244.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/napari_workflows_wrapper.py, which is 20.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/napari_workflows_wrapper.py, which is 91.8% (224/244).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/napari_workflows_wrapper.py.$

yokogawa_to_ome_zarr.py

$This PR doesn't change the number of statements in fractal_tasks_core/tasks/yokogawa_to_ome_zarr.py, which is 94.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/yokogawa_to_ome_zarr.py, which is 5.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tasks/yokogawa_to_ome_zarr.py, which is 94.68% (89/94).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/yokogawa_to_ome_zarr.py.$

Project Total

fractal-analytics-platform / fractal-tasks-core