[auto] Update dependencies in `poetry.lock`

fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform

BSD 3-Clause "New" or "Revised" License

14 stars 6 forks source link

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 5 updates, 0 removals

  - Updating typing-extensions (4.11.0 -> 4.12.0)
  - Updating zipp (3.18.2 -> 3.19.0)
  - Updating scipy (1.13.0 -> 1.13.1)
  - Updating array-api-compat (1.6 -> 1.7)
  - Updating zarr (2.18.1 -> 2.18.2)

Writing lock file

Outdated dependencies before PR:

anyio                      (!) 4.3.0      4.4.0     High level compatibility...
array-api-compat               1.6        1.7       A wrapper around NumPy a...
autopep8                   (!) 2.1.0      2.1.1     A tool that automaticall...
cellpose                   (!) 2.2.3      3.0.8     anatomical segmentation ...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.14.0    A platform independent f...
fonttools                  (!) 4.51.0     4.52.4    Tools to manipulate font...
ipython                    (!) 8.18.1     8.24.0    IPython: Productive Inte...
jupyter-client             (!) 8.6.1      8.6.2     Jupyter protocol impleme...
jupyterlab                 (!) 4.2.0      4.2.1     JupyterLab computational...
jupyterlab-server          (!) 2.27.1     2.27.2    A set of server componen...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pooch                      (!) 1.8.0      1.8.1     "Pooch manages your Pyth...
prompt-toolkit             (!) 3.0.43     3.0.44    Library for building pow...
pydantic                       1.10.15    2.7.1     Data validation and sett...
requests                   (!) 2.32.1     2.32.2    Python HTTP for Humans.
roifile                    (!) 2024.3.20  2024.5.24 Read and write ImageJ RO...
scikit-image               (!) 0.22.0     0.23.2    Image processing in Python
scipy                          1.13.0     1.13.1    Fundamental algorithms f...
setuptools                     69.5.1     70.0.0    Easily download, build, ...
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
stackview                  (!) 0.7.6      0.7.7     Interactive image stack ...
tifffile                   (!) 2024.5.10  2024.5.22 Read and write TIFF files
torch                      (!) 2.0.0      2.3.0     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...
typing-extensions              4.11.0     4.12.0    Backported and Experimen...
zarr                           2.18.1     2.18.2    An implementation of chu...
zipp                           3.18.2     3.19.0    Backport of pathlib-comp...

Outdated dependencies after PR:

cellpose                   (!) 2.2.3      3.0.8     anatomical segmentation ...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.14.0    A platform independent f...
ipython                    (!) 8.18.1     8.24.0    IPython: Productive Inte...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pooch                      (!) 1.8.0      1.8.1     "Pooch manages your Pyth...
pydantic                       1.10.15    2.7.1     Data validation and sett...
scikit-image               (!) 0.22.0     0.23.2    Image processing in Python
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
torch                      (!) 2.0.0      2.3.0     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...

Note: there may be dependencies in the table above which were not updated as part of this PR. The reason is they require manual updating due to the way they are pinned.

File	Statements	Missing	Coverage	Coverage (new stmts)
fractal_tasks_core
channels.py	$This PR removes 1 from the number of statements in fractal_tasks_core/channels.py, taking it from 188 to 187.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/channels.py, which is 1.$	$This PR removes 0.00 percentage points from the coverage rate in fractal_tasks_core/channels.py, taking it from 99.46% (187/188) to 99.46% (186/187).$	$This PR does not seem to add statements to fractal_tasks_core/channels.py.$
labels.py	$This PR removes 1 from the number of statements in fractal_tasks_core/labels.py, taking it from 40 to 39.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/labels.py, which is 0.$	$This PR doesn't change the coverage rate in fractal_tasks_core/labels.py, which is 100% (39/39).$	$This PR does not seem to add statements to fractal_tasks_core/labels.py.$
masked_loading.py	$This PR removes 1 from the number of statements in fractal_tasks_core/masked_loading.py, taking it from 63 to 62.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/masked_loading.py, which is 8.$	$This PR removes 0.20 percentage points from the coverage rate in fractal_tasks_core/masked_loading.py, taking it from 87.3% (55/63) to 87.09% (54/62).$	$This PR does not seem to add statements to fractal_tasks_core/masked_loading.py.$
pyramids.py	$This PR removes 1 from the number of statements in fractal_tasks_core/pyramids.py, taking it from 33 to 32.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/pyramids.py, which is 0.$	$This PR doesn't change the coverage rate in fractal_tasks_core/pyramids.py, which is 100% (32/32).$	$This PR does not seem to add statements to fractal_tasks_core/pyramids.py.$
fractal_tasks_core/cellvoyager
filenames.py	$This PR removes 1 from the number of statements in fractal_tasks_core/cellvoyager/filenames.py, taking it from 52 to 51.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/cellvoyager/filenames.py, which is 1.$	$This PR removes 0.04 percentage points from the coverage rate in fractal_tasks_core/cellvoyager/filenames.py, taking it from 98.07% (51/52) to 98.03% (50/51).$	$This PR does not seem to add statements to fractal_tasks_core/cellvoyager/filenames.py.$
metadata.py	$This PR removes 1 from the number of statements in fractal_tasks_core/cellvoyager/metadata.py, taking it from 114 to 113.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/cellvoyager/metadata.py, which is 7.$	$This PR removes 0.05 percentage points from the coverage rate in fractal_tasks_core/cellvoyager/metadata.py, taking it from 93.85% (107/114) to 93.8% (106/113).$	$This PR does not seem to add statements to fractal_tasks_core/cellvoyager/metadata.py.$
wells.py	$This PR removes 1 from the number of statements in fractal_tasks_core/cellvoyager/wells.py, taking it from 19 to 18.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/cellvoyager/wells.py, which is 0.$	$This PR doesn't change the coverage rate in fractal_tasks_core/cellvoyager/wells.py, which is 100% (18/18).$	$This PR does not seem to add statements to fractal_tasks_core/cellvoyager/wells.py.$
fractal_tasks_core/roi
_overlaps_common.py	$This PR removes 1 from the number of statements in fractal_tasks_core/roi/_overlaps_common.py, taking it from 22 to 21.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/_overlaps_common.py, which is 0.$	$This PR doesn't change the coverage rate in fractal_tasks_core/roi/_overlaps_common.py, which is 100% (21/21).$	$This PR does not seem to add statements to fractal_tasks_core/roi/_overlaps_common.py.$
v1.py	$This PR removes 1 from the number of statements in fractal_tasks_core/roi/v1.py, taking it from 156 to 155.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1.py, which is 1.$	$This PR removes 0.00 percentage points from the coverage rate in fractal_tasks_core/roi/v1.py, taking it from 99.35% (155/156) to 99.35% (154/155).$	$This PR does not seem to add statements to fractal_tasks_core/roi/v1.py.$
v1_checks.py	$This PR removes 1 from the number of statements in fractal_tasks_core/roi/v1_checks.py, taking it from 37 to 36.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1_checks.py, which is 0.$	$This PR doesn't change the coverage rate in fractal_tasks_core/roi/v1_checks.py, which is 100% (36/36).$	$This PR does not seem to add statements to fractal_tasks_core/roi/v1_checks.py.$
v1_overlaps.py	$This PR removes 1 from the number of statements in fractal_tasks_core/roi/v1_overlaps.py, taking it from 145 to 144.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1_overlaps.py, which is 5.$	$This PR removes 0.02 percentage points from the coverage rate in fractal_tasks_core/roi/v1_overlaps.py, taking it from 96.55% (140/145) to 96.52% (139/144).$	$This PR does not seem to add statements to fractal_tasks_core/roi/v1_overlaps.py.$
fractal_tasks_core/tables
__init__.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tables/__init__.py, taking it from 17 to 16.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tables/__init__.py, which is 0.$	$This PR doesn't change the coverage rate in fractal_tasks_core/tables/__init__.py, which is 100% (16/16).$	$This PR does not seem to add statements to fractal_tasks_core/tables/__init__.py.$
fractal_tasks_core/tasks
_registration_utils.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/_registration_utils.py, taking it from 69 to 68.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/_registration_utils.py, which is 2.$	$This PR removes 0.04 percentage points from the coverage rate in fractal_tasks_core/tasks/_registration_utils.py, taking it from 97.1% (67/69) to 97.05% (66/68).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/_registration_utils.py.$
_utils.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/_utils.py, taking it from 29 to 28.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/_utils.py, which is 5.$	$This PR removes 0.62 percentage points from the coverage rate in fractal_tasks_core/tasks/_utils.py, taking it from 82.75% (24/29) to 82.14% (23/28).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/_utils.py.$
apply_registration_to_image.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/apply_registration_to_image.py, taking it from 127 to 126.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/apply_registration_to_image.py, which is 17.$	$This PR removes 0.11 percentage points from the coverage rate in fractal_tasks_core/tasks/apply_registration_to_image.py, taking it from 86.61% (110/127) to 86.5% (109/126).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/apply_registration_to_image.py.$
calculate_registration_image_based.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/calculate_registration_image_based.py, taking it from 71 to 70.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/calculate_registration_image_based.py, which is 6.$	$This PR removes 0.12 percentage points from the coverage rate in fractal_tasks_core/tasks/calculate_registration_image_based.py, taking it from 91.54% (65/71) to 91.42% (64/70).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/calculate_registration_image_based.py.$
cellpose_segmentation.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellpose_segmentation.py, taking it from 202 to 201.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellpose_segmentation.py, which is 23.$	$This PR removes 0.06 percentage points from the coverage rate in fractal_tasks_core/tasks/cellpose_segmentation.py, taking it from 88.61% (179/202) to 88.55% (178/201).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/cellpose_segmentation.py.$
cellpose_transforms.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellpose_transforms.py, taking it from 78 to 77.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellpose_transforms.py, which is 8.$	$This PR removes 0.13 percentage points from the coverage rate in fractal_tasks_core/tasks/cellpose_transforms.py, taking it from 89.74% (70/78) to 89.61% (69/77).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/cellpose_transforms.py.$
cellvoyager_to_ome_zarr_compute.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_compute.py, taking it from 79 to 78.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_compute.py, which is 4.$	$This PR removes 0.06 percentage points from the coverage rate in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_compute.py, taking it from 94.93% (75/79) to 94.87% (74/78).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_compute.py.$
cellvoyager_to_ome_zarr_init.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py, taking it from 165 to 164.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py, which is 25.$	$This PR removes 0.09 percentage points from the coverage rate in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py, taking it from 84.84% (140/165) to 84.75% (139/164).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py.$
cellvoyager_to_ome_zarr_init_multiplex.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init_multiplex.py, taking it from 199 to 198.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init_multiplex.py, which is 20.$	$This PR removes 0.05 percentage points from the coverage rate in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init_multiplex.py, taking it from 89.94% (179/199) to 89.89% (178/198).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init_multiplex.py.$
copy_ome_zarr_hcs_plate.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py, taking it from 108 to 107.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py, which is 3.$	$This PR removes 0.03 percentage points from the coverage rate in fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py, taking it from 97.22% (105/108) to 97.19% (104/107).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py.$
find_registration_consensus.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/find_registration_consensus.py, taking it from 48 to 47.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/find_registration_consensus.py, which is 4.$	$This PR removes 0.18 percentage points from the coverage rate in fractal_tasks_core/tasks/find_registration_consensus.py, taking it from 91.66% (44/48) to 91.48% (43/47).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/find_registration_consensus.py.$
illumination_correction.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/illumination_correction.py, taking it from 95 to 94.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/illumination_correction.py, which is 7.$	$This PR removes 0.08 percentage points from the coverage rate in fractal_tasks_core/tasks/illumination_correction.py, taking it from 92.63% (88/95) to 92.55% (87/94).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/illumination_correction.py.$
image_based_registration_hcs_init.py	$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/image_based_registration_hcs_init.py, taking it from 22 to 21.$	$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/image_based_registration_hcs_init.py, which is 2.$	$This PR removes 0.43 percentage points from the coverage rate in fractal_tasks_core/tasks/image_based_registration_hcs_init.py, taking it from 90.9% (20/22) to 90.47% (19/21).$	$This PR does not seem to add statements to fractal_tasks_core/tasks/image_based_registration_hcs_init.py.$
Project Total

File

Statements

Missing

Coverage

Coverage
(new stmts)

Lines missing

fractal_tasks_core

channels.py

$This PR removes 1 from the number of statements in fractal_tasks_core/channels.py, taking it from 188 to 187.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/channels.py, which is 1.$

$This PR removes 0.00 percentage points from the coverage rate in fractal_tasks_core/channels.py, taking it from 99.46% (187/188) to 99.46% (186/187).$

$This PR does not seem to add statements to fractal_tasks_core/channels.py.$

labels.py

$This PR removes 1 from the number of statements in fractal_tasks_core/labels.py, taking it from 40 to 39.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/labels.py, which is 0.$

$This PR doesn't change the coverage rate in fractal_tasks_core/labels.py, which is 100% (39/39).$

$This PR does not seem to add statements to fractal_tasks_core/labels.py.$

masked_loading.py

$This PR removes 1 from the number of statements in fractal_tasks_core/masked_loading.py, taking it from 63 to 62.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/masked_loading.py, which is 8.$

$This PR removes 0.20 percentage points from the coverage rate in fractal_tasks_core/masked_loading.py, taking it from 87.3% (55/63) to 87.09% (54/62).$

$This PR does not seem to add statements to fractal_tasks_core/masked_loading.py.$

pyramids.py

$This PR removes 1 from the number of statements in fractal_tasks_core/pyramids.py, taking it from 33 to 32.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/pyramids.py, which is 0.$

$This PR doesn't change the coverage rate in fractal_tasks_core/pyramids.py, which is 100% (32/32).$

$This PR does not seem to add statements to fractal_tasks_core/pyramids.py.$

fractal_tasks_core/cellvoyager

filenames.py

$This PR removes 1 from the number of statements in fractal_tasks_core/cellvoyager/filenames.py, taking it from 52 to 51.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/cellvoyager/filenames.py, which is 1.$

$This PR removes 0.04 percentage points from the coverage rate in fractal_tasks_core/cellvoyager/filenames.py, taking it from 98.07% (51/52) to 98.03% (50/51).$

$This PR does not seem to add statements to fractal_tasks_core/cellvoyager/filenames.py.$

metadata.py

$This PR removes 1 from the number of statements in fractal_tasks_core/cellvoyager/metadata.py, taking it from 114 to 113.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/cellvoyager/metadata.py, which is 7.$

$This PR removes 0.05 percentage points from the coverage rate in fractal_tasks_core/cellvoyager/metadata.py, taking it from 93.85% (107/114) to 93.8% (106/113).$

$This PR does not seem to add statements to fractal_tasks_core/cellvoyager/metadata.py.$

wells.py

$This PR removes 1 from the number of statements in fractal_tasks_core/cellvoyager/wells.py, taking it from 19 to 18.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/cellvoyager/wells.py, which is 0.$

$This PR doesn't change the coverage rate in fractal_tasks_core/cellvoyager/wells.py, which is 100% (18/18).$

$This PR does not seem to add statements to fractal_tasks_core/cellvoyager/wells.py.$

fractal_tasks_core/roi

_overlaps_common.py

$This PR removes 1 from the number of statements in fractal_tasks_core/roi/_overlaps_common.py, taking it from 22 to 21.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/_overlaps_common.py, which is 0.$

$This PR doesn't change the coverage rate in fractal_tasks_core/roi/_overlaps_common.py, which is 100% (21/21).$

$This PR does not seem to add statements to fractal_tasks_core/roi/_overlaps_common.py.$

v1.py

$This PR removes 1 from the number of statements in fractal_tasks_core/roi/v1.py, taking it from 156 to 155.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1.py, which is 1.$

$This PR removes 0.00 percentage points from the coverage rate in fractal_tasks_core/roi/v1.py, taking it from 99.35% (155/156) to 99.35% (154/155).$

$This PR does not seem to add statements to fractal_tasks_core/roi/v1.py.$

v1_checks.py

$This PR removes 1 from the number of statements in fractal_tasks_core/roi/v1_checks.py, taking it from 37 to 36.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1_checks.py, which is 0.$

$This PR doesn't change the coverage rate in fractal_tasks_core/roi/v1_checks.py, which is 100% (36/36).$

$This PR does not seem to add statements to fractal_tasks_core/roi/v1_checks.py.$

v1_overlaps.py

$This PR removes 1 from the number of statements in fractal_tasks_core/roi/v1_overlaps.py, taking it from 145 to 144.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/roi/v1_overlaps.py, which is 5.$

$This PR removes 0.02 percentage points from the coverage rate in fractal_tasks_core/roi/v1_overlaps.py, taking it from 96.55% (140/145) to 96.52% (139/144).$

$This PR does not seem to add statements to fractal_tasks_core/roi/v1_overlaps.py.$

fractal_tasks_core/tables

__init__.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tables/__init__.py, taking it from 17 to 16.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tables/__init__.py, which is 0.$

$This PR doesn't change the coverage rate in fractal_tasks_core/tables/__init__.py, which is 100% (16/16).$

$This PR does not seem to add statements to fractal_tasks_core/tables/__init__.py.$

fractal_tasks_core/tasks

_registration_utils.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/_registration_utils.py, taking it from 69 to 68.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/_registration_utils.py, which is 2.$

$This PR removes 0.04 percentage points from the coverage rate in fractal_tasks_core/tasks/_registration_utils.py, taking it from 97.1% (67/69) to 97.05% (66/68).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/_registration_utils.py.$

_utils.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/_utils.py, taking it from 29 to 28.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/_utils.py, which is 5.$

$This PR removes 0.62 percentage points from the coverage rate in fractal_tasks_core/tasks/_utils.py, taking it from 82.75% (24/29) to 82.14% (23/28).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/_utils.py.$

apply_registration_to_image.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/apply_registration_to_image.py, taking it from 127 to 126.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/apply_registration_to_image.py, which is 17.$

$This PR removes 0.11 percentage points from the coverage rate in fractal_tasks_core/tasks/apply_registration_to_image.py, taking it from 86.61% (110/127) to 86.5% (109/126).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/apply_registration_to_image.py.$

calculate_registration_image_based.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/calculate_registration_image_based.py, taking it from 71 to 70.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/calculate_registration_image_based.py, which is 6.$

$This PR removes 0.12 percentage points from the coverage rate in fractal_tasks_core/tasks/calculate_registration_image_based.py, taking it from 91.54% (65/71) to 91.42% (64/70).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/calculate_registration_image_based.py.$

cellpose_segmentation.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellpose_segmentation.py, taking it from 202 to 201.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellpose_segmentation.py, which is 23.$

$This PR removes 0.06 percentage points from the coverage rate in fractal_tasks_core/tasks/cellpose_segmentation.py, taking it from 88.61% (179/202) to 88.55% (178/201).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/cellpose_segmentation.py.$

cellpose_transforms.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellpose_transforms.py, taking it from 78 to 77.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellpose_transforms.py, which is 8.$

$This PR removes 0.13 percentage points from the coverage rate in fractal_tasks_core/tasks/cellpose_transforms.py, taking it from 89.74% (70/78) to 89.61% (69/77).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/cellpose_transforms.py.$

cellvoyager_to_ome_zarr_compute.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_compute.py, taking it from 79 to 78.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_compute.py, which is 4.$

$This PR removes 0.06 percentage points from the coverage rate in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_compute.py, taking it from 94.93% (75/79) to 94.87% (74/78).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_compute.py.$

cellvoyager_to_ome_zarr_init.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py, taking it from 165 to 164.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py, which is 25.$

$This PR removes 0.09 percentage points from the coverage rate in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py, taking it from 84.84% (140/165) to 84.75% (139/164).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init.py.$

cellvoyager_to_ome_zarr_init_multiplex.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init_multiplex.py, taking it from 199 to 198.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init_multiplex.py, which is 20.$

$This PR removes 0.05 percentage points from the coverage rate in fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init_multiplex.py, taking it from 89.94% (179/199) to 89.89% (178/198).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/cellvoyager_to_ome_zarr_init_multiplex.py.$

copy_ome_zarr_hcs_plate.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py, taking it from 108 to 107.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py, which is 3.$

$This PR removes 0.03 percentage points from the coverage rate in fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py, taking it from 97.22% (105/108) to 97.19% (104/107).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py.$

find_registration_consensus.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/find_registration_consensus.py, taking it from 48 to 47.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/find_registration_consensus.py, which is 4.$

$This PR removes 0.18 percentage points from the coverage rate in fractal_tasks_core/tasks/find_registration_consensus.py, taking it from 91.66% (44/48) to 91.48% (43/47).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/find_registration_consensus.py.$

illumination_correction.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/illumination_correction.py, taking it from 95 to 94.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/illumination_correction.py, which is 7.$

$This PR removes 0.08 percentage points from the coverage rate in fractal_tasks_core/tasks/illumination_correction.py, taking it from 92.63% (88/95) to 92.55% (87/94).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/illumination_correction.py.$

image_based_registration_hcs_init.py

$This PR removes 1 from the number of statements in fractal_tasks_core/tasks/image_based_registration_hcs_init.py, taking it from 22 to 21.$

$This PR doesn't change the number of statements missing coverage in fractal_tasks_core/tasks/image_based_registration_hcs_init.py, which is 2.$

$This PR removes 0.43 percentage points from the coverage rate in fractal_tasks_core/tasks/image_based_registration_hcs_init.py, taking it from 90.9% (20/22) to 90.47% (19/21).$

$This PR does not seem to add statements to fractal_tasks_core/tasks/image_based_registration_hcs_init.py.$

Project Total

fractal-analytics-platform / fractal-tasks-core