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fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
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[auto] Update dependencies in `poetry.lock` #746

Closed tcompa closed 6 months ago

tcompa commented 6 months ago

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 5 updates, 0 removals

  - Updating typing-extensions (4.12.0 -> 4.12.1)
  - Updating zipp (3.19.0 -> 3.19.1)
  - Updating fsspec (2024.5.0 -> 2024.6.0)
  - Updating dask (2024.5.1 -> 2024.5.2)
  - Updating array-api-compat (1.7 -> 1.7.1)

Writing lock file

Outdated dependencies before PR:

array-api-compat               1.7        1.7.1     A wrapper around NumPy a...
autopep8                   (!) 2.1.1      2.2.0     A tool that automaticall...
cellpose                   (!) 2.2.3      3.0.8     anatomical segmentation ...
certifi                    (!) 2024.2.2   2024.6.2  Python package for provi...
dask                           2024.5.1   2024.5.2  Parallel PyData with Tas...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.14.0    A platform independent f...
fonttools                  (!) 4.52.4     4.53.0    Tools to manipulate font...
fsspec                         2024.5.0   2024.6.0  File-system specification
imagecodecs                (!) 2024.1.1   2024.6.1  Image transformation, co...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
ipython                    (!) 8.18.1     8.25.0    IPython: Productive Inte...
ipywidgets                 (!) 8.1.2      8.1.3     Jupyter interactive widgets
jupyter-server             (!) 2.14.0     2.14.1    The backend—i.e. core se...
jupyterlab-widgets         (!) 3.0.10     3.0.11    Jupyter interactive widg...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
opencv-python-headless     (!) 4.9.0.80   4.10.0.82 Wrapper package for Open...
pandas                         1.5.3      2.2.2     Powerful data structures...
pooch                      (!) 1.8.0      1.8.1     "Pooch manages your Pyth...
prompt-toolkit             (!) 3.0.44     3.0.45    Library for building pow...
pydantic                       1.10.15    2.7.3     Data validation and sett...
requests                   (!) 2.32.2     2.32.3    Python HTTP for Humans.
scikit-image               (!) 0.22.0     0.23.2    Image processing in Python
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
stackview                  (!) 0.7.7      0.7.10    Interactive image stack ...
sympy                      (!) 1.12       1.12.1    Computer algebra system ...
torch                      (!) 2.0.0      2.3.0     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...
typing-extensions              4.12.0     4.12.1    Backported and Experimen...
widgetsnbextension         (!) 4.0.10     4.0.11    Jupyter interactive widg...
zipp                           3.19.0     3.19.1    Backport of pathlib-comp...

Outdated dependencies after PR:

cellpose                   (!) 2.2.3      3.0.8     anatomical segmentation ...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.14.0    A platform independent f...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
ipython                    (!) 8.18.1     8.25.0    IPython: Productive Inte...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pooch                      (!) 1.8.0      1.8.1     "Pooch manages your Pyth...
pydantic                       1.10.15    2.7.3     Data validation and sett...
scikit-image               (!) 0.22.0     0.23.2    Image processing in Python
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
torch                      (!) 2.0.0      2.3.0     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...

Note: there may be dependencies in the table above which were not updated as part of this PR. The reason is they require manual updating due to the way they are pinned.

github-actions[bot] commented 6 months ago

Coverage report

This PR does not seem to contain any modification to coverable code.