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fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
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[auto] Update dependencies in `poetry.lock` #761

Closed tcompa closed 2 weeks ago

tcompa commented 3 weeks ago

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 3 updates, 0 removals

  - Updating packaging (24.0 -> 24.1)
  - Updating typing-extensions (4.12.1 -> 4.12.2)
  - Updating zipp (3.19.1 -> 3.19.2)

Writing lock file

Outdated dependencies before PR:

cellpose                   (!) 2.2.3      3.0.9     anatomical segmentation ...
cmake                      (!) 3.29.3     3.29.5    CMake is an open-source,...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.14.0    A platform independent f...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
ipython                    (!) 8.18.1     8.25.0    IPython: Productive Inte...
jsonpointer                (!) 2.4        3.0.0     Identify specific nodes ...
jupyterlab                 (!) 4.2.1      4.2.2     JupyterLab computational...
lit                        (!) 18.1.6     18.1.7    A Software Testing Tool
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
magicgui                   (!) 0.8.2      0.8.3     build GUIs from python t...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
notebook                   (!) 7.2.0      7.2.1     Jupyter Notebook - A web...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
packaging                      24.0       24.1      Core utilities for Pytho...
pandas                         1.5.3      2.2.2     Powerful data structures...
pint                       (!) 0.23       0.24      Physical quantities module
pooch                      (!) 1.8.0      1.8.2     "Pooch manages your Pyth...
prompt-toolkit             (!) 3.0.45     3.0.47    Library for building pow...
pydantic                       1.10.15    2.7.3     Data validation and sett...
scikit-image               (!) 0.22.0     0.23.2    Image processing in Python
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
superqt                    (!) 0.6.6      0.6.7     Missing widgets and comp...
torch                      (!) 2.0.0      2.3.1     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...
typing-extensions              4.12.1     4.12.2    Backported and Experimen...
webcolors                  (!) 1.13       24.6.0    A library for working wi...
zipp                           3.19.1     3.19.2    Backport of pathlib-comp...

Outdated dependencies after PR:

cellpose                   (!) 2.2.3      3.0.9     anatomical segmentation ...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.14.0    A platform independent f...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
ipython                    (!) 8.18.1     8.25.0    IPython: Productive Inte...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pint                       (!) 0.23       0.24      Physical quantities module
pooch                      (!) 1.8.0      1.8.2     "Pooch manages your Pyth...
pydantic                       1.10.15    2.7.3     Data validation and sett...
scikit-image               (!) 0.22.0     0.23.2    Image processing in Python
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
torch                      (!) 2.0.0      2.3.1     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...

Note: there may be dependencies in the table above which were not updated as part of this PR. The reason is they require manual updating due to the way they are pinned.

github-actions[bot] commented 3 weeks ago

Coverage report

This PR does not seem to contain any modification to coverable code.

tcompa commented 2 weeks ago

Closing so that we don't interfere with #738.