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fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
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[auto] Update dependencies in `poetry.lock` #767

Closed tcompa closed 1 week ago

tcompa commented 2 weeks ago

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 5 updates, 0 removals

  - Updating packaging (24.0 -> 24.1)
  - Updating typing-extensions (4.12.1 -> 4.12.2)
  - Updating pydantic (1.10.15 -> 1.10.16)
  - Updating zipp (3.19.1 -> 3.19.2)
  - Updating dask (2024.5.2 -> 2024.6.0)

Writing lock file

Outdated dependencies before PR:

autopep8                   (!) 2.2.0      2.3.0     A tool that automaticall...
cellpose                   (!) 2.2.3      3.0.9     anatomical segmentation ...
cmake                      (!) 3.29.3     3.29.5.1  CMake is an open-source,...
dask                           2024.5.2   2024.6.0  Parallel PyData with Tas...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
fastjsonschema             (!) 2.19.1     2.20.0    Fastest Python implement...
fastremap                  (!) 1.14.1     1.14.2    Remap, mask, renumber, u...
filelock                       3.13.4     3.15.1    A platform independent f...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
ipython                    (!) 8.18.1     8.25.0    IPython: Productive Inte...
jsonpointer                (!) 2.4        3.0.0     Identify specific nodes ...
jupyterlab                 (!) 4.2.1      4.2.2     JupyterLab computational...
lit                        (!) 18.1.6     18.1.7    A Software Testing Tool
llvmlite                   (!) 0.42.0     0.43.0    lightweight wrapper arou...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
magicgui                   (!) 0.8.2      0.8.3     build GUIs from python t...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
notebook                   (!) 7.2.0      7.2.1     Jupyter Notebook - A web...
numba                      (!) 0.59.1     0.60.0    compiling Python code us...
numpy                          1.26.4     2.0.0     Fundamental package for ...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
opencv-python-headless     (!) 4.10.0.82  4.10.0.84 Wrapper package for Open...
packaging                      24.0       24.1      Core utilities for Pytho...
pandas                         1.5.3      2.2.2     Powerful data structures...
pint                       (!) 0.23       0.24      Physical quantities module
pooch                      (!) 1.8.0      1.8.2     "Pooch manages your Pyth...
prompt-toolkit             (!) 3.0.45     3.0.47    Library for building pow...
pycodestyle                (!) 2.11.1     2.12.0    Python style guide checker
pydantic                       1.10.15    2.7.4     Data validation and sett...
scikit-image               (!) 0.22.0     0.23.2    Image processing in Python
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
superqt                    (!) 0.6.6      0.6.7     Missing widgets and comp...
torch                      (!) 2.0.0      2.3.1     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...
typing-extensions              4.12.1     4.12.2    Backported and Experimen...
urllib3                    (!) 2.2.1      2.2.2     HTTP library with thread...
vispy                      (!) 0.14.2     0.14.3    Interactive visualizatio...
webcolors                  (!) 1.13       24.6.0    A library for working wi...
zipp                           3.19.1     3.19.2    Backport of pathlib-comp...

Outdated dependencies after PR:

cellpose                   (!) 2.2.3      3.0.9     anatomical segmentation ...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.15.1    A platform independent f...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
ipython                    (!) 8.18.1     8.25.0    IPython: Productive Inte...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
numpy                          1.26.4     2.0.0     Fundamental package for ...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pint                       (!) 0.23       0.24      Physical quantities module
pooch                      (!) 1.8.0      1.8.2     "Pooch manages your Pyth...
pydantic                       1.10.16    2.7.4     Data validation and sett...
scikit-image               (!) 0.22.0     0.23.2    Image processing in Python
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
torch                      (!) 2.0.0      2.3.1     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...

Note: there may be dependencies in the table above which were not updated as part of this PR. The reason is they require manual updating due to the way they are pinned.

github-actions[bot] commented 2 weeks ago

Coverage report

This PR does not seem to contain any modification to coverable code.