search

fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
11 stars 5 forks source link

[auto] Update dependencies in `poetry.lock` #769

Closed tcompa closed 1 week ago

tcompa commented 1 week ago

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 3 updates, 0 removals

  - Updating importlib-metadata (7.1.0 -> 7.2.1)
  - Updating dask (2024.6.0 -> 2024.6.2)
  - Updating anndata (0.10.7 -> 0.10.8)

Writing lock file

Outdated dependencies before PR:

anndata                        0.10.7     0.10.8    Annotated data.
autopep8                   (!) 2.3.0      2.3.1     A tool that automaticall...
cellpose                   (!) 2.2.3      3.0.10    anatomical segmentation ...
cmake                      (!) 3.29.5.1   3.29.6    CMake is an open-source,...
dask                           2024.6.0   2024.6.2  Parallel PyData with Tas...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.15.4    A platform independent f...
imageio                    (!) 2.34.1     2.34.2    Library for reading and ...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
importlib-metadata             7.1.0      7.2.1     Read metadata from Pytho...
ipython                    (!) 8.18.1     8.25.0    IPython: Productive Inte...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
napari-svg                 (!) 0.1.10     0.2.0     A plugin for reading and...
networkx                   (!) 3.2.1      3.3       Python package for creat...
npe2                       (!) 0.7.5      0.7.6     napari plugin engine v2
numpy                          1.26.4     2.0.0     Fundamental package for ...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pint                       (!) 0.23       0.24.1    Physical quantities module
pooch                      (!) 1.8.0      1.8.2     "Pooch manages your Pyth...
psutil                     (!) 5.9.8      6.0.0     Cross-platform lib for p...
pydantic-core                  2.18.4     2.20.0    Core functionality for P...
pyperclip                  (!) 1.8.2      1.9.0     A cross-platform clipboa...
scikit-image               (!) 0.22.0     0.24.0    Image processing in Python
scipy                          1.13.1     1.14.0    Fundamental algorithms f...
setuptools                     70.0.0     70.1.0    Easily download, build, ...
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
tifffile                   (!) 2024.5.22  2024.6.18 Read and write TIFF files
torch                      (!) 2.0.0      2.3.1     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...

Outdated dependencies after PR:

cellpose                   (!) 2.2.3      3.0.10    anatomical segmentation ...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                       3.13.4     3.15.4    A platform independent f...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
ipython                    (!) 8.18.1     8.25.0    IPython: Productive Inte...
lxml                           4.9.4      5.2.2     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
numpy                          1.26.4     2.0.0     Fundamental package for ...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.1.1.17  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pooch                      (!) 1.8.0      1.8.2     "Pooch manages your Pyth...
pydantic-core                  2.18.4     2.20.0    Core functionality for P...
scipy                          1.13.1     1.14.0    Fundamental algorithms f...
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
torch                      (!) 2.0.0      2.3.1     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.1     A language and compiler ...

Note: there may be dependencies in the table above which were not updated as part of this PR. The reason is they require manual updating due to the way they are pinned.

github-actions[bot] commented 1 week ago

Coverage report

This PR does not seem to contain any modification to coverable code.