This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.
This pull request contains the following modifications:
Update install instructions in README.md
Provide PPI network details in data/README.md
Remove interactions in the iRefIndex PPI network that contain : because these indicate UniProt, RefSeq, or rogid identifiers
The update to the PPI network will affect the test script results so we need to consider when it is appropriate to merge this change.
In addition, the file tests/test_OmicsIntegrator.py is no longer needed after the merge with the jpgulliver/score-test branch (b7ca81d18990f83b826e991cc89b4b1478bbb81a) so I deleted it.
This pull request contains the following modifications:
:because these indicate UniProt, RefSeq, or rogid identifiersThe update to the PPI network will affect the test script results so we need to consider when it is appropriate to merge this change.
In addition, the file tests/test_OmicsIntegrator.py is no longer needed after the merge with the jpgulliver/score-test branch (b7ca81d18990f83b826e991cc89b4b1478bbb81a) so I deleted it.