i) add pipeline function to execute all the analysis steps ii) add support to use FASTQ / BAM files as input iii) add interface to support the web app (inlcuding export of all data in JSON format) iv) added support for library KY 1.1 v) minor fixes to replace options / par with the relate withr functions
i) add pipeline function to execute all the analysis steps ii) add support to use FASTQ / BAM files as input iii) add interface to support the web app (inlcuding export of all data in JSON format) iv) added support for library KY 1.1 v) minor fixes to replace options / par with the relate withr functions