francescojm / CRISPRcleanR

Unsupervised correction of gene independent cell responses to CRISPR-cas9
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Correct way to handle batches? #4

Closed yesitsjess closed 4 years ago

yesitsjess commented 4 years ago

Hello!

The data I'm trying to analyse is replicates of the same samples but from different batches. In other words, I have control and sample reads from experiments conducted last year, and then replicates for the same samples were conducted this year, producing new control and sample reads.

Do you have any advice on how to process this using CRISPRcleanR?

Thanks, Jess