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francescomantegna / mlm_music

mixed linear model for a tonal prediction EEG experiment
GNU General Public License v3.0
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Issues in profiling #6

Open palday opened 4 years ago

palday commented 4 years ago

Profiling breaks on current workstation:

> prof <- profile(m_n5_from_p3, which="beta_", parallel="snow", ncpus=4)
Error in profile.merMod(m_n5_from_p3, which = "beta_", parallel = "snow",  : 
  Profiling over both the residual variance and
fixed effects is not numerically consistent with
profiling over the fixed effects only

Session info:

> sessionInfo()
R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Linux Mint 19.3

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_AU.UTF-8       
 [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_AU.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] knitr_1.29      lattice_0.20-41 MASS_7.3-51.6   effects_4.1-4   car_3.0-8       carData_3.0-4  
 [7] lme4_1.1-23     Matrix_1.2-18   forcats_0.5.0   stringr_1.4.0   dplyr_1.0.0     purrr_0.3.4    
[13] readr_1.3.1     tidyr_1.1.0     tibble_3.0.1    ggplot2_3.3.2   tidyverse_1.3.0 here_0.1       

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.4.6      lubridate_1.7.9   assertthat_0.2.1  rprojroot_1.3-2   packrat_0.5.0    
 [6] R6_2.4.1          cellranger_1.1.0  backports_1.1.8   reprex_0.3.0      survey_4.0       
[11] highr_0.8         httr_1.4.1        pillar_1.4.4      rlang_0.4.6       curl_4.3         
[16] readxl_1.3.1      rstudioapi_0.11   minqa_1.2.4       data.table_1.12.8 nloptr_1.2.2.1   
[21] blob_1.2.1        splines_3.6.3     statmod_1.4.34    foreign_0.8-76    munsell_0.5.0    
[26] broom_0.5.6       xfun_0.15         compiler_3.6.3    modelr_0.1.8      pkgconfig_2.0.3  
[31] mitools_2.4       nnet_7.3-14       tidyselect_1.1.0  rio_0.5.16        fansi_0.4.1      
[36] crayon_1.3.4      dbplyr_1.4.4      withr_2.2.0       grid_3.6.3        nlme_3.1-148     
[41] jsonlite_1.6.1    gtable_0.3.0      lifecycle_0.2.0   DBI_1.1.0         magrittr_1.5     
[46] scales_1.1.1      zip_2.0.4         cli_2.0.2         stringi_1.4.6     fs_1.4.1         
[51] xml2_1.3.2        ellipsis_0.3.1    generics_0.0.2    vctrs_0.3.1       boot_1.3-25      
[56] openxlsx_4.1.5    tools_3.6.3       glue_1.4.1        hms_0.5.3         survival_3.1-12  
[61] abind_1.4-5       colorspace_1.4-1  rvest_0.3.5       haven_2.3.1