Open g1o opened 4 years ago
After make_correlation_plot.R, table.Rmd will fail if there is nothing.
idx <- which(
(plotframe$corrected_contrasts < defs$linear_model.qvalue.cutoff) & (plotframe$Spearman_qvalue < defs$spearman.qvalue.cutoff) & (plotframe$Pearson_qvalue < defs$pearson.qvalue.cutoff) & (plotframe$Kendall_qvalue < defs$kendall.qvalue.cutoff) & # correlation cutoffs ((plotframe$Pearson_cor > defs$pearson.cor.upper.cutoff) | (plotframe$Pearson_cor < defs$pearson.cor.lower.cutoff)) & ((plotframe$Spearman_cor > defs$spearman.cor.upper.cutoff) | (plotframe$Spearman_cor < defs$spearman.cor.lower.cutoff)) & ((plotframe$Kendall_cor > defs$kendall.cor.upper.cutoff) | (plotframe$Kendall_cor < defs$kendall.cor.lower.cutoff)) & # basic statistics cutoffs (plotframe$size > defs$annotation_size.cutoff) & (plotframe$prevalence > defs$prevalence.cutoff) & (plotframe$heterogeneity > defs$heterogeneity.cutoff) & (plotframe$sd > defs$sd.cutoff) & (plotframe$cv > defs$cv.cutoff))
After make_correlation_plot.R, table.Rmd will fail if there is nothing.
idx <- which(
q-value cutoffs