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franciscozorrilla / metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
https://franciscozorrilla.github.io/metaGEM/
MIT License
189 stars 41 forks source link

Run the workflow locally #108

Closed Poccia closed 1 year ago

Poccia commented 2 years ago

I just want to know if it is possible to run the workflow locally on my computer. I've setup the workflow e just then noticed that it is designed for clusters, but I'm working on a computer that can handle the job.

franciscozorrilla commented 2 years ago

Hey, yes its possible with the --local flag, just might take some extra setup and tweaking to get things going. There some more details in this thread/comment but please let me know if you run into any issues/questions.