:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
I tired to check the SMETANA codes to understand the software's logics. And I found the smetana.py are using functions from a package called reframed from Daniel Machado.
But I can not find resources to indicate the functions in Reframed. May I ask do you know where I can learn about the functions in reframed or some explanations for SMETANA codes?
You may find the SMETANA GitHub repo and associated code here. Please also have a look at the accompanying paper. Reframed is the metabolic modelling package that Daniel developed, and is used by a number of his tools.
franciscozorrilla
commented
2 years ago
Hi Francisco,
I tired to check the SMETANA codes to understand the software's logics. And I found the smetana.py are using functions from a package called reframed from Daniel Machado. But I can not find resources to indicate the functions in Reframed. May I ask do you know where I can learn about the functions in reframed or some explanations for SMETANA codes?
Best, Yue