:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
🩻 Single batch submission of GTDBTk-based taxonomic classification 🚀
Current GTDBTk rule is great when dealing with many metagenomes, but when dealing with many isolate samples it makes more sense to follow this subworkflow task.
🐍 Snakefile tasks
[x] create GTDBTk_singlerun for single job submission of small number of genomes
🔨 Additional modifications for full integration/support
[ ] metaGEM.sh: add options + support for new tasks, helpfile message
🩻 Single batch submission of GTDBTk-based taxonomic classification 🚀
Current GTDBTk rule is great when dealing with many metagenomes, but when dealing with many isolate samples it makes more sense to follow this subworkflow task.
🐍 Snakefile tasks
🔨 Additional modifications for full integration/support