:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
I'm working on a project where I wish to use MAGs to create a community GEM (6 species). The MAGs will be obtained from somewhere else, and I want to use that data to create the model using meta-GEM.
1) Under the FAQs, It says that the pipeline is flexible to accommodate pre-binned MAGs. Could you describe how I do this in more detail? I'm unable to find documentation for this case.
2) Since it's only 6 species, can I can create the model on my PC ?
Dear Francisco
I'm working on a project where I wish to use MAGs to create a community GEM (6 species). The MAGs will be obtained from somewhere else, and I want to use that data to create the model using meta-GEM.
1) Under the FAQs, It says that the pipeline is flexible to accommodate pre-binned MAGs. Could you describe how I do this in more detail? I'm unable to find documentation for this case.
2) Since it's only 6 species, can I can create the model on my PC ?
Thanks Charan