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franciscozorrilla / metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
https://franciscozorrilla.github.io/metaGEM/
MIT License
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feat: Add KneadData as optional pre-processing of raw data #28

Closed franciscozorrilla closed 2 years ago

franciscozorrilla commented 3 years ago

Add KneadData to metaGEM as some users may wish to filter out host-associated sequences prior to analysis (e.g. #27).

franciscozorrilla commented 3 years ago

see also here for preproccessing