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franciscozorrilla / metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
https://franciscozorrilla.github.io/metaGEM/
MIT License
203 stars 42 forks source link

feat: use snakemake integrated conda feature to annotate jobs #33

Closed franciscozorrilla closed 2 years ago

franciscozorrilla commented 3 years ago

Johannes Koster considers activating conda envs within jobs to be bad practice, use integrated conda feature instead. See documentation: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#integrated-package-management