:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
It would be more exciting for users if they could upload their own raw reads, assemblies, bins, etc. to the google colab notebook.
Need to look around to see what is the best and most reproducible way of going about this, may be best to make a skeleton/template for downloading a sample or MAG from SRA/MGnify so users can simply switch out the link/sampleID to analyze their data of interest.
It would be more exciting for users if they could upload their own raw reads, assemblies, bins, etc. to the google colab notebook.
Need to look around to see what is the best and most reproducible way of going about this, may be best to make a skeleton/template for downloading a sample or MAG from SRA/MGnify so users can simply switch out the link/sampleID to analyze their data of interest.