feat: add rules to create and query custom protein db using diamond

franciscozorrilla / metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

https://franciscozorrilla.github.io/metaGEM/

MIT License

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feat: add rules to create and query custom protein db using diamond #67

Closed franciscozorrilla closed 2 years ago

franciscozorrilla commented 3 years ago

createDBrule for creating database should be implemented with no wildcards:
```
diamond makedb --in proteins.fa -d custom_db
```
queryDBrule for querying should be implemented with sample-specific wildcards:
```
diamond blastp -q query.fa -d custom_db -o output.tsv --very-sensitive
```
See diamond tutorial for more details.